Jatropha Genome Database

JcCB0148531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0148531.10 - phase: 2 /pseudo/partial
         (171 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027766001 assembled CDS                                        98   1e-21
GSVIVT01030640001 assembled CDS                                        94   4e-20
GSVIVT01014589001 assembled CDS                                        87   5e-18
GSVIVT01007339001 assembled CDS                                        75   1e-14
GSVIVT01036203001 assembled CDS                                        60   6e-10
GSVIVT01024084001 assembled CDS                                        52   1e-07
GSVIVT01018777001 assembled CDS                                        48   2e-06

>GSVIVT01027766001 assembled CDS
          Length = 248

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 5/118 (4%)

Query: 4   DSSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAK 63
           DSS R  TKACREK+RR+RLN+RF+DL SILEPG    ++K+AIL  A  +LN LR EAK
Sbjct: 89  DSSTRPGTKACREKLRRERLNDRFLDLSSILEPGKSAKTDKLAILGDAIRVLNQLRNEAK 148

Query: 64  ELKDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSSFAPQFSFYP 121
           +L+D N+ LQE I                  A+K+R+E  ++++S     AP   F+P
Sbjct: 149 DLEDANEKLQEEIRSLKAEKNELREEKLLLKADKERIEQQMKAIS-----APAAGFWP 201


>GSVIVT01030640001 assembled CDS
          Length = 223

 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 68/118 (57%)

Query: 4   DSSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAK 63
           +S   + TKACREK+RRDRLNERF++L SILEPG    ++K AIL  A  ++  LR EA+
Sbjct: 59  ESCGATGTKACREKLRRDRLNERFLELGSILEPGRPPKTDKAAILSDAVRMVTQLRSEAQ 118

Query: 64  ELKDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSSFAPQFSFYP 121
           +LK+ N  LQE I                  AEK+++E  V+++S    F P  S  P
Sbjct: 119 KLKESNGDLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKAISAQPGFLPHPSAMP 176


>GSVIVT01014589001 assembled CDS
          Length = 237

 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 68/118 (57%)

Query: 4   DSSARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAK 63
           +S   S +KACREK+RRDRLN++FM+L SILEPG    ++K +IL  A  ++  LR E++
Sbjct: 73  ESCGASSSKACREKLRRDRLNDKFMELGSILEPGRPPKTDKSSILIDAVRMVTQLRGESQ 132

Query: 64  ELKDKNKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSSFAPQFSFYP 121
           +LKD N  LQE I                  AEK+++E  +++++   SF P     P
Sbjct: 133 KLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKAMNAQPSFLPPVPSIP 190


>GSVIVT01007339001 assembled CDS
          Length = 225

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 60/113 (53%)

Query: 9   SRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAKELKDK 68
           S +KACREK+RRDRLN+RF++L SILEPG     +K  IL  A  ++  LR E ++LK  
Sbjct: 66  SGSKACREKVRRDRLNDRFLELGSILEPGRPPKMDKAVILSDALRMMTQLRSEGQKLKKS 125

Query: 69  NKFLQETIXXXXXXXXXXXXXXXXXXAEKKRMENAVESLSIPSSFAPQFSFYP 121
            + LQE I                   EK+ +   +++LS  + F P  S  P
Sbjct: 126 CEDLQEKINELKAEKNELRDEKQRLKTEKENIVQQIKALSSQAGFLPHPSAIP 178


>GSVIVT01036203001 assembled CDS
          Length = 154

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 27  FMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAKELKDKNKFLQETIXXXXXXXXXX 86
           F+DL S+LEPG    ++K +IL  A H+LN LR EA+ELK K + L+E I          
Sbjct: 19  FLDLSSLLEPGRPPKTDKSSILSDAIHVLNQLRTEARELKGKTQKLREDIRTLKAEKSEL 78

Query: 87  XXXXXXXXAEKKRMENAVESLS-IPSSFAP 115
                   A+K++M+  V++++ +P  + P
Sbjct: 79  REEKLILKADKEKMQQRVKAMNVVPPGYVP 108


>GSVIVT01024084001 assembled CDS
          Length = 329

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 6   SARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAKEL 65
           +AR   KA REK+RRDRLNE+F++L + L+P   +N +K  IL     LL  L  + ++L
Sbjct: 44  TARKVQKADREKLRRDRLNEQFIELGNALDPDRPKN-DKATILSDTIQLLKDLTAQVEKL 102

Query: 66  KDKNKFLQE 74
           K +N  L E
Sbjct: 103 KAENASLNE 111


>GSVIVT01018777001 assembled CDS
          Length = 326

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 6   SARSRTKACREKMRRDRLNERFMDLYSILEPGNFQNSNKVAILRYAAHLLNHLRIEAKEL 65
           +AR   KA REK+RRDRLNE F++L + L+P   +N +K  IL     +L  L  E   L
Sbjct: 48  AARKVQKADREKLRRDRLNEHFLELGNTLDPDRPKN-DKATILADTIQMLKDLTAEVNRL 106

Query: 66  K 66
           K
Sbjct: 107 K 107