Jatropha Genome Database

JcCB0148401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0148401.10 - phase: 0 /pseudo
         (449 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008673001 assembled CDS                                       701   0.0  
GSVIVT01033801001 assembled CDS                                       452   e-127
GSVIVT01037695001 assembled CDS                                       230   1e-60
GSVIVT01035168001 assembled CDS                                        50   2e-06
GSVIVT01009087001 assembled CDS                                        49   6e-06

>GSVIVT01008673001 assembled CDS
          Length = 840

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/447 (76%), Positives = 381/447 (85%), Gaps = 7/447 (1%)

Query: 1   MLASLDLFPAPAFGSVS-PSLGKNFKRALGNN--LHKQKLIGLTFESR--KLHGSPKFYF 55
           M  S+ LF  P  GS S PS   ++K   GN   L KQ+ I ++   R  KL G   F+ 
Sbjct: 1   MYGSVGLFSTPLLGSSSTPSSRNHYKTGSGNKYCLAKQQPIRVSNGPRLQKLLGHCTFHC 60

Query: 56  MPGIST-NKRHGLTITAVMTDDNTTM-TNEKEMEDIHLLSIDPGLGPFKDHFSYRMKRYR 113
               ST  K +G  I+A++TDDN+ M T  ++ E I +L  DPGL PFKDHF YRM+RY 
Sbjct: 61  PSRNSTYGKVNGSAISALITDDNSAMATMGEDTEHIGILDTDPGLEPFKDHFRYRMRRYV 120

Query: 114 NQKEQIEKHEGGLDEFSRGYLKFGFNREEGGIVYREWAPAAEEAQVIGDFNGWDGSNHKM 173
            QKE IEK+EG L+EF++GYLKFGFNREEGGIVYREWAPAA+EAQVIGDFNGWDGSNH+M
Sbjct: 121 EQKELIEKYEGSLEEFAQGYLKFGFNREEGGIVYREWAPAAQEAQVIGDFNGWDGSNHRM 180

Query: 174 EKNEFGVWSIKITDAAGNPAIPHNSRVKFRFKHGNGIWVDRIPAWIRYATVDPSNFGAPY 233
           E+N+FGVWSIKI D+ GNPAIPHNSRVKFRFKHG+G+WVDRIPAWIRYATVDP+ F APY
Sbjct: 181 ERNQFGVWSIKIPDSGGNPAIPHNSRVKFRFKHGDGVWVDRIPAWIRYATVDPTAFAAPY 240

Query: 234 DGVYWDPPASERYQFEYPRPPKPRAPRIYEAHVGMSSSEPRVNTYREFADDVLPRIRANN 293
           DGVYWDPP SERYQF+YP P KP APRIYEAHVGMSSSEPRVN+YREFADD+LPRIRANN
Sbjct: 241 DGVYWDPPPSERYQFKYPCPSKPNAPRIYEAHVGMSSSEPRVNSYREFADDILPRIRANN 300

Query: 294 YNTVQLMAVMEHSYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLCVLMDVIHSH 353
           YNTVQLMAVMEHSYY SFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGL VLMDV+HSH
Sbjct: 301 YNTVQLMAVMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSH 360

Query: 354 ASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWLEE 413
           ASNNVTDGLNGFDVGQSSQ+SYFHTGDRGYH+LWDS+LFNYANWEVLRFL+SNLRWWLEE
Sbjct: 361 ASNNVTDGLNGFDVGQSSQDSYFHTGDRGYHELWDSKLFNYANWEVLRFLISNLRWWLEE 420

Query: 414 YKFDGFRFDGVTSMLYHHHGIDMAFTG 440
           +KFDGFRFDGVTSMLYHHHG++M FTG
Sbjct: 421 FKFDGFRFDGVTSMLYHHHGVNMTFTG 447


>GSVIVT01033801001 assembled CDS
          Length = 859

 Score =  452 bits (1162), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/351 (62%), Positives = 261/351 (74%), Gaps = 7/351 (1%)

Query: 91  LLSIDPGLGPFKDHFSYRMKRYRNQKEQIEKHEGGLDEFSRGYLKFGFNREEGGIVYREW 150
           +  IDP L  +++H  YR  +Y+  +E I+K+EGGLD FSRGY K GF R   GI YREW
Sbjct: 174 IYEIDPFLRGYREHLDYRFGQYKKMREAIDKYEGGLDLFSRGYEKMGFTRSATGITYREW 233

Query: 151 APAAEEAQVIGDFNGWDGSNHKMEKNEFGVWSIKI-TDAAGNPAIPHNSRVKFRFKHGNG 209
           AP A+ A +IGDFN W+ +   M +NEFGVW I +  +A G+P IPH SRVK      +G
Sbjct: 234 APGAKSAALIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 293

Query: 210 IWVDRIPAWIRYATVDPSNFGAPYDGVYWDPPASERYQFEYPRPPKPRAPRIYEAHVGMS 269
           I  D IPAWI ++   P     PY+G+Y+DPP  E+Y F++P+P KP++ RIYEAHVGMS
Sbjct: 294 I-KDSIPAWIEFSVQAPGEI--PYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEAHVGMS 350

Query: 270 SSEPRVNTYREFADDVLPRIRANNYNTVQLMAVMEHSYYGSFGYHVTNFFAVSSRSGTPE 329
           S EP VNTY  F DDVLPRI+   YN VQ+MA+ EHSYYGSFGYHVTNFFA SSR GTP+
Sbjct: 351 SMEPVVNTYANFRDDVLPRIKRLGYNAVQIMAIQEHSYYGSFGYHVTNFFAPSSRCGTPD 410

Query: 330 DLKYLIDKAHSLGLCVLMDVIHSHASNNVTDGLNGFDVGQSSQESYFHTGDRGYHKLWDS 389
           DLK LIDKAH LGL VLMD++HSHASNNV DGLN FD    +   YFH+G RGYH +WDS
Sbjct: 411 DLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNRFD---GTDSHYFHSGSRGYHWMWDS 467

Query: 390 RLFNYANWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGIDMAFTG 440
           RLFNY +WEVLRFLLSN RWWL+EYKFDGFRFDGVTSM+Y HHG+ + FTG
Sbjct: 468 RLFNYGSWEVLRFLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVEFTG 518


>GSVIVT01037695001 assembled CDS
          Length = 896

 Score =  230 bits (586), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/251 (45%), Positives = 166/251 (66%), Gaps = 7/251 (2%)

Query: 192 PAIPHNSRVKFRFKHGNGIWVDRIPAWIRYATVDPSNFGAPYDGVYWDPPASERYQFEYP 251
           P IPH S+ +  F   +G  ++RIPAW  Y  V P   G     ++W+PP    ++++  
Sbjct: 331 PGIPHGSKYRVYFNTPDGP-LERIPAWATY--VLPDVDGKQAFAIHWEPPPESAHRWKNM 387

Query: 252 RPPKPRAPRIYEAHVGMSSSEPRVNTYREFADDVLPRIRANNYNTVQLMAVMEHSYYGSF 311
           RP  P++ RIYE HVG+S SE +++++ EF ++VLP I+   YN +QL+ V+EH  Y S 
Sbjct: 388 RPNVPKSLRIYECHVGISGSEQKISSFNEFTENVLPHIKEAGYNAIQLIGVVEHKDYSSV 447

Query: 312 GYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLCVLMDVIHSHASNNVTDGLNGFDVGQSS 371
           GY VTN +A SSR GTP+D K L+D+AH  G+ V +D++HS+++ +   GL+ FD    S
Sbjct: 448 GYKVTNLYATSSRYGTPDDFKRLVDEAHGQGMLVFLDIVHSYSAADEMVGLSLFD---GS 504

Query: 372 QESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHH 431
            + YFHTG RG+HK W +R+F Y + +VL FLLSNL WW+ EY+ DGF+F  ++SM+Y H
Sbjct: 505 NDCYFHTGKRGHHKYWGTRMFKYGDPDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTH 564

Query: 432 HGIDMAFTG*L 442
           +G   +FTG L
Sbjct: 565 NGF-ASFTGDL 574


>GSVIVT01035168001 assembled CDS
          Length = 809

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 20/140 (14%)

Query: 294 YNTVQLMAVMEHSYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLCVLMDVIHSH 353
           Y+TV   + M    Y S G H     A++       ++K LI +AH  G+ VLMDV+ +H
Sbjct: 314 YSTVNYFSPMIR--YSSAGIHNCGHDAIN-------EVKLLIREAHKRGIEVLMDVVFNH 364

Query: 354 ASNNVTDG----LNGFDVGQSSQESYFHTGDRG--YHKLWDSRLFNYANWEVLRFLLSNL 407
            +    +G      G D        Y+    +G  Y+       FN  +  V +F+L  L
Sbjct: 365 TAEGNENGPILSFRGVD-----NSVYYMLAPKGEFYNYSGCGNTFNCNHPIVRQFILDCL 419

Query: 408 RWWLEEYKFDGFRFDGVTSM 427
           R+W+ E   DGFRFD  + M
Sbjct: 420 RYWVTEMHVDGFRFDLASIM 439


>GSVIVT01009087001 assembled CDS
          Length = 775

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 35/173 (20%)

Query: 286 LPRIRANNYNTVQLMAVMEHSYY-------------GSFGYHVTNFFAVSSR----SGTP 328
           +P +     N V+L+ V E   +              ++GY   NFFA  SR     G P
Sbjct: 278 IPHLLDLGINAVELLPVFEFDEFEFQRRPNPRDHMINTWGYSTINFFAPMSRYASAGGGP 337

Query: 329 ----EDLKYLIDKAHSLGLCVLMDVIHSHAS-----NNVTDGLNGFDVGQSSQESYFHTG 379
                + K ++   H  G+ V++DV+++H +     N  T    G D      + Y+   
Sbjct: 338 IKASREFKEMVKALHGAGIEVILDVVYNHTNEADDENPYTTSFRGID-----NKVYYMVD 392

Query: 380 DRGYHKLWD----SRLFNYANWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSML 428
                +L +        N  +  V+  +L +LR W+ EY  DGFRFD  + + 
Sbjct: 393 LNNEGQLLNFSGCGNTLNCNHPMVMELILDSLRHWVIEYHVDGFRFDLASVLC 445