Jatropha Genome Database

JcCB0147481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0147481.10 + phase: 0 /partial
         (261 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007226001 assembled CDS                                       311   2e-85

>GSVIVT01007226001 assembled CDS
          Length = 738

 Score =  311 bits (796), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/261 (59%), Positives = 188/261 (72%), Gaps = 3/261 (1%)

Query: 1   AGDLYVVLSSFLPKRGAIKSVAVYPSEFGLERMKEEELHGPVGLFXXXXXXXXXXXXXXX 60
           A DL++VLSSFLPK G I SVA+YPSEFGL+RM+EE +HGP+GLF               
Sbjct: 201 AVDLFMVLSSFLPKDGHILSVAIYPSEFGLKRMEEEAVHGPIGLFDDEKEQSDDDGDNEI 260

Query: 61  XXXXXLRAYEKSRLRYFYAVVECDSIATAEHLYKACDGVEFERSSNVLDLRFVPDSMEFK 120
                LRAYEKSRL Y+YAVV+CDS ATA++LYKACDG+EFERSSNVLDLRF+PDSMEFK
Sbjct: 261 DDEK-LRAYEKSRLSYYYAVVDCDSSATADYLYKACDGIEFERSSNVLDLRFIPDSMEFK 319

Query: 121 HPPRDIAEEAPTNYDGLDFHTKALQHSNIAISWDEDEPQRVKTLKRKFNADQLADLELKE 180
           HPP DIA EAP  Y+GLDFHT+ALQHS I ISWDEDEPQR KTLKRK+N D+ A+L +KE
Sbjct: 320 HPPHDIATEAPAKYEGLDFHTRALQHSKIHISWDEDEPQRAKTLKRKYNDDEQAELAMKE 379

Query: 181 FLAXXXXXXXXXXXXXVAEGEVDKKIKKRDKYRALIXXXXXXXXXXXXXXXXMEITFHTG 240
           FLA               + + DK+ K+++KY AL+                ME+TF+TG
Sbjct: 380 FLASDTDESETDDNEN--DDQSDKEHKRQNKYLALLESGDGSDRDDEEDGQDMEVTFNTG 437

Query: 241 LEGLSKRLLERKDKKSESVWE 261
           LE +SKR+LE+++KKSE+VWE
Sbjct: 438 LEDISKRILEKREKKSETVWE 458