Jatropha Genome Database

JcCB0147231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0147231.10 + phase: 1 /partial
         (274 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010617001 assembled CDS                                       356   8e-99

>GSVIVT01010617001 assembled CDS
          Length = 313

 Score =  356 bits (913), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 176/269 (65%), Positives = 211/269 (78%), Gaps = 6/269 (2%)

Query: 11  PLIQLNIRPKFRAKVTRKSLVIAS----RIDNSQTRENQQQELNLSILRFTFGIPGLDES 66
           PLI L   P F AK     L +++    R   S +  NQQQ+LNLS+LRFT GIPG DES
Sbjct: 33  PLIPLK-PPSFPAKARSSHLPVSTINTTRKFQSISASNQQQQLNLSVLRFTLGIPGFDES 91

Query: 67  YLPRWIGYGFGSLLLLNHFLGSN-SAASPPQLRTEALGISLAAFSIALPFFGRFLKGVRP 125
           YLPRWIGYGFGS +LLNHF+GS+ +  +  QLRTEALG+ LAAFS+ LP+ G+FLKG  P
Sbjct: 92  YLPRWIGYGFGSFILLNHFVGSDLNTITAAQLRTEALGLCLAAFSVVLPYLGKFLKGAAP 151

Query: 126 MDQAALPGGAEQIFLMSENIFDTQKEDLAWATYVLLRNTNTIAVLISIQGGLCVRGYWKT 185
           +DQ  LP G EQIF+M++NI D  KEDLAWATY+LLRNTNTIAVLISI+G LCVRGYW T
Sbjct: 152 VDQTTLPEGIEQIFVMTQNISDILKEDLAWATYILLRNTNTIAVLISIRGALCVRGYWNT 211

Query: 186 PDNLSKAQLLDWFLKQIDSIGLFDLRDTLYFPQTAESGLWEMLPKGTRSLLVEPVHQARA 245
           PD++SKA++LDW  K+I+ IGL DL+DTLYFPQ+A+SGLWEMLPKGT SLLV+PV Q  +
Sbjct: 212 PDDVSKARVLDWVEKEIEKIGLSDLKDTLYFPQSADSGLWEMLPKGTCSLLVQPVSQIPS 271

Query: 246 KSANEMGKNEGFVLLASSMEYAYGDKDRA 274
           +  +EM K +GFVLLASSM YAY DKDRA
Sbjct: 272 QGTDEMEKIDGFVLLASSMNYAYTDKDRA 300