Jatropha Genome Database

JcCB0144511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0144511.10 + phase: 0 /partial
         (362 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009290001 assembled CDS                                       509   e-145
GSVIVT01032523001 assembled CDS                                       330   6e-91
GSVIVT01002010001 assembled CDS                                       295   2e-80
GSVIVT01033168001 assembled CDS                                       194   4e-50
GSVIVT01016135001 assembled CDS                                       194   6e-50
GSVIVT01033767001 assembled CDS                                       163   1e-40
GSVIVT01034719001 assembled CDS                                       150   9e-37
GSVIVT01025737001 assembled CDS                                       132   2e-31
GSVIVT01031405001 assembled CDS                                       128   5e-30

>GSVIVT01009290001 assembled CDS
          Length = 647

 Score =  509 bits (1311), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 256/362 (70%), Positives = 280/362 (77%), Gaps = 58/362 (16%)

Query: 1   MAPSFDWWAKEGHRGTPVVVKMENPNWSMVELEGPSEEDFIIGANSPARTRDKSRNKNAK 60
           MAPSFDWW KE HRGTPVVVKMENPNWS+ ELEGPS++DF++ A SP   RDK R KNA+
Sbjct: 1   MAPSFDWWTKESHRGTPVVVKMENPNWSIAELEGPSDDDFLL-AGSPNTNRDKGRGKNAR 59

Query: 61  QLTWVLLLKAHKAAGCLTSIASAMVSLGSSIKRRLRSGRTDTDTEGDADIDRVNEDPTVR 120
           QLTWVLLLKAHKAAGCLTSIASAM  L ++                              
Sbjct: 60  QLTWVLLLKAHKAAGCLTSIASAMFGLAAA------------------------------ 89

Query: 121 TRFYSCIKVFLWLSVLLLGFEMAAYFKGWHFGAPHLQLQYLLATPFGFKDIFDSLYSRWV 180
                   VFLWLSV+LL FE+AAYFK                 P+G KDIF+SLYSRWV
Sbjct: 90  --------VFLWLSVVLLVFEVAAYFKA----------------PYGVKDIFNSLYSRWV 125

Query: 181 LIRVEYLAPPLQFLANVCIVLFLIQSLDRLILCLGCFWIRFKKIKPIPKQDAVADLESGE 240
           LIRVEYLAPPLQFLAN CIVLFLIQS+DRL+LCLGCFWI+FKKIKP+PK     DLESG+
Sbjct: 126 LIRVEYLAPPLQFLANACIVLFLIQSVDRLVLCLGCFWIKFKKIKPVPK--GTVDLESGD 183

Query: 241 -NGFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPITQLLIKEEVN 299
            NG+FP VLVQIPMCNEKEVYQQSIAA CNLDWPKS ILIQVLDDSDDP+TQL+IKEEV 
Sbjct: 184 GNGYFPRVLVQIPMCNEKEVYQQSIAACCNLDWPKSSILIQVLDDSDDPVTQLMIKEEVT 243

Query: 300 KWQQEGSHIVYRHREIREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPTPDFLKRTVPH 359
           KWQQEG+HI+YRHR IR+GYKAGNLKSAM+CSYVKDYEFVAIFDADFQPTPDFLKRTVPH
Sbjct: 244 KWQQEGAHILYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPH 303

Query: 360 FK 361
           FK
Sbjct: 304 FK 305


>GSVIVT01032523001 assembled CDS
          Length = 662

 Score =  330 bits (846), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 174/347 (50%), Positives = 224/347 (64%), Gaps = 35/347 (10%)

Query: 16  TPVVVKMENP-NWSMVELEGPSEEDFIIGANSPARTRDKSRNKNAKQLTWVLLLKAHKAA 74
           + VV+ +E P N+S+VE+ G     F           +K +  + KQ TWVLLLK H+A 
Sbjct: 4   SSVVLTIEKPSNFSLVEITGSKTSMF----------PEKEKAASPKQFTWVLLLKVHRAL 53

Query: 75  GCLTSIASAMVSLGSSIKRRLRSGRTDTDTEGDADIDRVNEDPTVRTRFYSCIKVFLWLS 134
            CL+ +A+   ++  + K+RL                   E+PT R R Y  I+ F+++S
Sbjct: 54  ACLSWLATGAWTVFVAAKKRLALSEIK------------EEEPTNRGRLYRFIRAFVFIS 101

Query: 135 VLLLGFEMAAYFKGWHFGAPHLQLQYLLATPFGFKDIFDSLYSRWVLIRVEYLAPPLQFL 194
           ++ L  E+ A+FK W+           L  P   + +    Y  W+  RV+Y+AP +  L
Sbjct: 102 IVALFMEVIAHFKKWNLN---------LIQPLEVQGLVQWSYMAWLSFRVDYIAPLVLIL 152

Query: 195 ANVCIVLFLIQSLDRLILCLGCFWIRFKKIKPIPKQDAVADLESGENGFFPMVLVQIPMC 254
           +  CIVLFLIQSLDRL LC GCFWI+ KK+KP    DA  D+E G +  FPMVLVQIPMC
Sbjct: 153 SKFCIVLFLIQSLDRLFLCFGCFWIKHKKLKPEMDADAY-DIEDGSS--FPMVLVQIPMC 209

Query: 255 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPITQLLIKEEVNKWQQEGSHIVYRHRE 314
           NEKEVY QSI+AVC LDWP+ ++LIQVLDDSDD   QLLIK EV+ W Q+G +I+YRHR 
Sbjct: 210 NEKEVYAQSISAVCQLDWPRERLLIQVLDDSDDENVQLLIKNEVSSWNQKGVNIIYRHRF 269

Query: 315 IREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFK 361
           +R GYKAGNLKSAM+C YVKDYEFVAIFDADFQP PDFLK+T+PHFK
Sbjct: 270 VRTGYKAGNLKSAMACDYVKDYEFVAIFDADFQPNPDFLKQTIPHFK 316


>GSVIVT01002010001 assembled CDS
          Length = 630

 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 173/358 (48%), Positives = 228/358 (63%), Gaps = 29/358 (8%)

Query: 6   DWWAKEGHRGTPVVVKMENPN--WSMVELEGPSEEDFIIGANSPARTRDKSRNKNAKQLT 63
           +WW K+  +   + +        ++ VE+  P+ +  +          DK R ++A+QL+
Sbjct: 11  EWWNKQREKHHDLFIDKSETQRLFTSVEIHTPTADPAV----------DKERTRSARQLS 60

Query: 64  WVLLLKAHKAAGCLTSIASAMVSLGSSIKRRLRSGRTDTDTEGDADIDRVNEDPTVRTRF 123
           WV LLK  + A  +  +++  V++  +  RR+ S     D+                +R 
Sbjct: 61  WVCLLKLQQLASSIAYLSNGFVAILRTANRRIASSSVAADSS------------RSESRL 108

Query: 124 YSCIKVFLWLSVLLLGFEMAAYFKGWHFGAPHLQLQYLLATPFGFKDIFDSLYSRWVLIR 183
           Y  IKVFL + ++LL FE+ AYFKGWHF  P L      +       + + +Y+ W+ IR
Sbjct: 109 YHAIKVFLVVVLVLLLFELVAYFKGWHFSPPSLS-----SAEVEVLGLVELVYANWLKIR 163

Query: 184 VEYLAPPLQFLANVCIVLFLIQSLDRLILCLGCFWIRFKKIKPIPKQDAVADLESGENGF 243
             YLAPPLQ L NVCIVLFLIQS+DR++L LGCFWI+F+K+KP+   +   + E      
Sbjct: 164 ANYLAPPLQSLTNVCIVLFLIQSVDRIVLMLGCFWIKFRKLKPVAVMEFSENSEGQNVQD 223

Query: 244 FPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPITQLLIKEEVNKWQQ 303
           +PMVLVQIPMCNE+EVYQQSIAAVC  DWP+ ++L+QVLDDSDD   Q LIK EV KWQQ
Sbjct: 224 YPMVLVQIPMCNEREVYQQSIAAVCIQDWPRERMLVQVLDDSDDLDVQHLIKAEVQKWQQ 283

Query: 304 EGSHIVYRHREIREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFK 361
            G  I+YRHR IR GYKAGNLKSAMSC YVKDYEFVAIFDADFQP PDFLK+T+P+FK
Sbjct: 284 RGLRILYRHRLIRTGYKAGNLKSAMSCDYVKDYEFVAIFDADFQPGPDFLKKTIPYFK 341


>GSVIVT01033168001 assembled CDS
          Length = 403

 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 101/116 (87%)

Query: 246 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPITQLLIKEEVNKWQQEG 305
           MVLVQIPMCNE+EVY+QSI+AVC +DWPK ++LIQVLDDSDD   Q LIK EV  W Q+G
Sbjct: 1   MVLVQIPMCNEREVYEQSISAVCQIDWPKDRLLIQVLDDSDDESIQCLIKAEVYNWSQQG 60

Query: 306 SHIVYRHREIREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFK 361
            +IVYRHR +R GYKAGNLKSAMSC YVK+YEFVAIFDADFQP PDFLK+TVPHF+
Sbjct: 61  INIVYRHRLVRTGYKAGNLKSAMSCDYVKNYEFVAIFDADFQPNPDFLKQTVPHFQ 116


>GSVIVT01016135001 assembled CDS
          Length = 436

 Score =  194 bits (493), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 101/116 (87%)

Query: 246 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPITQLLIKEEVNKWQQEG 305
           MVLVQIPMCNE+EVY+QSI+AVC LDWPK ++LIQVLDDSDD   Q LIK EV+KW Q+G
Sbjct: 1   MVLVQIPMCNEREVYEQSISAVCQLDWPKDRLLIQVLDDSDDESIQWLIKGEVSKWSQKG 60

Query: 306 SHIVYRHREIREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFK 361
            +I+YRHR +R GYKAGNLKSAM+C YVK YEFVAIFDADFQP PDFL +TVPHFK
Sbjct: 61  INIIYRHRLVRTGYKAGNLKSAMNCDYVKAYEFVAIFDADFQPNPDFLMQTVPHFK 116


>GSVIVT01033767001 assembled CDS
          Length = 540

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/195 (46%), Positives = 117/195 (60%), Gaps = 10/195 (5%)

Query: 170 DIFDSLYSRWVLIRVEYLAPPLQFLANVCIVLFLIQSLDRLILCLGCFWIRF------KK 223
           DI + L   W  I+   + P +     VC+ + L+   +R+ L +    ++       K+
Sbjct: 20  DISEQLGVVWSQIKAPVIVPLMSIAVAVCLAMSLMLFFERVYLSIVIVLVKLFGRKPDKR 79

Query: 224 IKPIPKQDAVADLESGENGFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLD 283
            K  P +D   D+E G N  +PMVLVQIPM NEKEVYQ SI A C L WP  +I+IQVLD
Sbjct: 80  YKWEPMKD---DVELG-NSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLD 135

Query: 284 DSDDPITQLLIKEEVNKWQQEGSHIVYRHREIREGYKAGNLKSAMSCSYVKDYEFVAIFD 343
           DS DP  + L++ E  +W  +G +I Y  R  R GYKAG LK  M  SYVK+ ++VAIFD
Sbjct: 136 DSTDPTIKDLVELECQRWASKGINIKYEIRNNRNGYKAGALKEGMKHSYVKECDYVAIFD 195

Query: 344 ADFQPTPDFLKRTVP 358
           ADFQP PDFL RTVP
Sbjct: 196 ADFQPEPDFLWRTVP 210


>GSVIVT01034719001 assembled CDS
          Length = 449

 Score =  150 bits (379), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 235 DLESGENGFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPITQLLI 294
           D+E G N  +PMVLVQIPM NEKEVYQ SI A C L WP  +I+IQVLDDS DP  + L+
Sbjct: 4   DVELG-NSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSERIIIQVLDDSTDPTIKDLV 62

Query: 295 KEEVNKWQQEGSHIVYRHREIREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPTPDFLK 354
           + E  +W  +G +I Y  R  R GYKAG LK  M  SYVK  ++VAIFDADFQP PDFL 
Sbjct: 63  EMECQRWASKGINIKYEIRGNRHGYKAGALKEGMKHSYVKQCDYVAIFDADFQPEPDFLW 122

Query: 355 RTVP 358
           RT+P
Sbjct: 123 RTIP 126


>GSVIVT01025737001 assembled CDS
          Length = 443

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 93/149 (62%), Gaps = 4/149 (2%)

Query: 210 LILCLGCFWIRFKKIKPIPKQDAVADLESGENGFFPMVLVQIPMCNEKEVYQQSIAAVCN 269
           +ILC+    +R K+           DLE   N  +P VL+QIPM NEKEVY+ SI A C+
Sbjct: 15  IILCVKV--MRKKRYTKYKLDTMKEDLEL--NKSYPKVLIQIPMYNEKEVYKLSIGAACS 70

Query: 270 LDWPKSKILIQVLDDSDDPITQLLIKEEVNKWQQEGSHIVYRHREIREGYKAGNLKSAMS 329
           + WP  + +IQVLDDS +   +++++ E  KW  +G ++ Y  R  R GYKAG L+  + 
Sbjct: 71  VSWPSDRFIIQVLDDSTNEALRVMVELECRKWIDKGVNVKYETRNNRNGYKAGALREGLQ 130

Query: 330 CSYVKDYEFVAIFDADFQPTPDFLKRTVP 358
             YV+D EFVAIFDADFQP  +FL RT+P
Sbjct: 131 KQYVEDCEFVAIFDADFQPEENFLWRTIP 159


>GSVIVT01031405001 assembled CDS
          Length = 429

 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 75/106 (70%)

Query: 253 MCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPITQLLIKEEVNKWQQEGSHIVYRH 312
           M NEKEVY+ SI A C L WP  +++IQVLDDS DP  + L++ E  +W  +G +I Y+ 
Sbjct: 1   MYNEKEVYKLSIGAACGLSWPADRLVIQVLDDSTDPAIKNLVETECQRWAAKGINIRYQI 60

Query: 313 REIREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPTPDFLKRTVP 358
           RE R GYKAG L+  +  SYVK  E+VAIFDADFQP PD+LKR +P
Sbjct: 61  RENRVGYKAGALREGLKRSYVKHCEYVAIFDADFQPEPDYLKRAIP 106