Jatropha Genome Database

JcCB0143751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143751.20 + phase: 0 
         (135 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009698001 assembled CDS                                       125   5e-30
GSVIVT01015373001 assembled CDS                                       112   4e-26
GSVIVT01022280001 assembled CDS                                        87   2e-18

>GSVIVT01009698001 assembled CDS
          Length = 264

 Score =  125 bits (315), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 74/103 (71%), Gaps = 4/103 (3%)

Query: 1   MATRDMEMEGDRELLIPVAEIPENAKSKTXXXXXXXXXXXXHRLSGVEALSKVIRSWASK 60
           M +R  E + D ELLIPVA   +N  SK+            H  SG EA SKVIRSWASK
Sbjct: 1   MGSR--ERDRDLELLIPVAATTDNVASKSSPSSPSSSSSHHH--SGREAFSKVIRSWASK 56

Query: 61  KFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           KFM+GCVILLPIA+TFY+TWGF HFVDGFFSPVYN LGIN+FG
Sbjct: 57  KFMSGCVILLPIAITFYITWGFFHFVDGFFSPVYNQLGINVFG 99


>GSVIVT01015373001 assembled CDS
          Length = 266

 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 68/103 (66%), Gaps = 8/103 (7%)

Query: 1   MATRDMEMEGDRELLIPVAEIPENAKSKTXXXXXXXXXXXXHRLSGVEALSKVIRSWASK 60
           MATR    E DRELLIPV++   +  + +             R    E   KV+RSWASK
Sbjct: 10  MATR----ERDRELLIPVSDSVNDGDASSKPSSSASSSHHPGR----ETFYKVVRSWASK 61

Query: 61  KFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           KFMTGCVIL PIA+TFY+TW F+HFVDGFFSP+Y  LGINIFG
Sbjct: 62  KFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYAQLGINIFG 104


>GSVIVT01022280001 assembled CDS
          Length = 255

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 54  IRSWASKKFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           ++SW SKKFMTGCV+L P+AVTF+VTW F+ FVDGFFSP+Y  LGI+IFG
Sbjct: 46  LQSWVSKKFMTGCVVLFPVAVTFFVTWWFIQFVDGFFSPLYERLGIDIFG 95