Jatropha Genome Database

JcCB0143731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143731.10 + phase: 0 /pseudo
         (271 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032640001 assembled CDS                                       102   2e-22
GSVIVT01012658001 assembled CDS                                        62   3e-10

>GSVIVT01032640001 assembled CDS
          Length = 230

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 88/120 (73%), Gaps = 13/120 (10%)

Query: 130 MGSDDKVEDVDWYQNHHLNGPNKQPPPSSQNHHKQEDSRS---KLLTLPTILTLGRVAAV 186
           MGS+ +   VDW +NH           SSQ    Q    S   KLLTLPT+LTLGRVAAV
Sbjct: 1   MGSESQDAAVDWSENHR----------SSQRKQPQPPPVSSSSKLLTLPTVLTLGRVAAV 50

Query: 187 PLLVSTFYLDSWWGRTATTSIFIAAAVTDWLDGYLARKMRLGSAFGAFLDPVADKVCVSS 246
           PLL+ TFY+DSWWG T TT+IFIAAA+TDWLDGYLARKMRLG+ FGAFLDPVADK+ V++
Sbjct: 51  PLLIGTFYVDSWWGTTTTTTIFIAAAITDWLDGYLARKMRLGTTFGAFLDPVADKLMVAA 110


>GSVIVT01012658001 assembled CDS
          Length = 348

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 9/82 (10%)

Query: 166 DSRSKLLTLPTILTLGRVAAVPLLVSTFYLDSWWGRTATTSIFIAAAV---TDWLDGYLA 222
           D     + LP +++  R+A+ PLL +   L+ W+      S F+  A+   TDWLDGY+A
Sbjct: 143 DFVKSFMNLPNLISFSRLASGPLL-AWMILNEWY-----LSAFVGLAISGATDWLDGYMA 196

Query: 223 RKMRLGSAFGAFLDPVADKVCV 244
           RKM + S  G++LDP+ADKV +
Sbjct: 197 RKMGINSVIGSYLDPLADKVLI 218