Jatropha Genome Database

JcCB0143591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143591.10 - phase: 0 /partial
         (230 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002259001 assembled CDS                                       291   2e-79
GSVIVT01020650001 assembled CDS                                        72   2e-13

>GSVIVT01002259001 assembled CDS
          Length = 687

 Score =  291 bits (744), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 140/189 (74%), Positives = 163/189 (86%), Gaps = 3/189 (1%)

Query: 10  MEPKDPNPTAEDETQIVVSRRIQRLSFHLTPIPCS-LYDSNQLGMVECAKAAKLVVNTDK 68
           M+  + NPTAEDE+Q+V SRRIQRLS HLTPIP S + D +QL ++ CA+  KL VNT  
Sbjct: 1   MDSPNTNPTAEDESQLV-SRRIQRLSLHLTPIPNSFIRDHHQLQLLTCARV-KLSVNTAL 58

Query: 69  LSLYMRGKHREIQEKVFAYFNSRPELQTPVEIAKDDYRELCWRQLLGLVREAGIRPFRYV 128
           LS ++RGKHR IQEKV+ YF SRP+LQTPVEI+KD++RELC RQLLGLVREAGIRPFRY+
Sbjct: 59  LSDFLRGKHRGIQEKVYEYFKSRPDLQTPVEISKDEHRELCMRQLLGLVREAGIRPFRYI 118

Query: 129 ADDPVKYFAILEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHREKYFDGIDNLEYPGC 188
            +DP KYFAI EA GSVDMSLGIK+GVQYSLWGGSV+NLGTKKH++KY+D IDNLEYPGC
Sbjct: 119 VEDPSKYFAIAEAAGSVDMSLGIKLGVQYSLWGGSVLNLGTKKHKDKYYDVIDNLEYPGC 178

Query: 189 FAMTELHHG 197
           FAMTELHHG
Sbjct: 179 FAMTELHHG 187


>GSVIVT01020650001 assembled CDS
          Length = 558

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%)

Query: 133 VKYFAILEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHREKYFDGIDNLEYPGCFAMT 192
           ++ FA+ E +G  D SL +K+GV Y LWGG++   GTK+H +K+    +N    GCFAMT
Sbjct: 1   MRKFALHEVIGMYDHSLAVKLGVHYFLWGGAIQFFGTKRHHDKWLRDSENYVIKGCFAMT 60

Query: 193 ELHHGK 198
           EL HG 
Sbjct: 61  ELGHGS 66