Jatropha Genome Database

JcCB0143221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143221.10 + phase: 0 /pseudo/partial
         (365 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007980001 assembled CDS                                       296   9e-81

>GSVIVT01007980001 assembled CDS
          Length = 698

 Score =  296 bits (759), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 143/248 (57%), Positives = 179/248 (72%), Gaps = 7/248 (2%)

Query: 124 ATALKNKRLTFAWLDGEAQEKYCLFYLHSETSYDTCGPRRDLSDVPRLFIVRYKRNTTQD 183
           A ALK+KRLTF WLDGEAQ++YC FY+HSE SYDTCGPRRD++DVP+LFIVRYKRN T D
Sbjct: 452 AIALKDKRLTFTWLDGEAQKQYCFFYIHSEDSYDTCGPRRDVADVPQLFIVRYKRNATVD 511

Query: 184 NVRGKR------NAFDDEDADPASQLVARYNGSDETPQIARWIAETISDGETRDLPFFKI 237
           +++ +R      N F +ED DPASQLVARYNGS E P+I +WI++ I DG++RDLP F+ 
Sbjct: 512 DLKVERRPKGIWNPFQEEDVDPASQLVARYNGSGEIPEIIKWISQIIKDGDSRDLPLFRT 571

Query: 238 KAPDLVPEDSDPIWSRGAQNILYKSVGVKHWIYRIKSRIYDHMGDPRIGPILLLGALMSF 297
           K P LVPED DPIWS+GAQ+IL  S G+K+ I  I S + D +GDPRIGP+LLLG+LMSF
Sbjct: 572 KTPQLVPEDGDPIWSKGAQSILSTSKGLKYRIKSIISGMNDRLGDPRIGPMLLLGSLMSF 631

Query: 298 GAVWLMRSQPAHRGQSSQPSESGXXXXXXXXXXXXXXXXXXXXXXPPSISDIEPKDAYQM 357
            ++WL RSQ  H+ +  QPS+                        P SI+D+EPKDAYQ 
Sbjct: 632 ASIWLKRSQATHQSRLDQPSQPS-NMDEDRKTRRNRKTTVSSQDRPTSITDMEPKDAYQA 690

Query: 358 PMSDSDSN 365
           P+SDSDS+
Sbjct: 691 PLSDSDSD 698