Jatropha Genome Database

JcCB0143121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143121.10 - phase: 0 /pseudo
         (319 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028516001 assembled CDS                                       129   2e-30
GSVIVT01020814001 assembled CDS                                        63   2e-10
GSVIVT01031338001 assembled CDS                                        53   2e-07

>GSVIVT01028516001 assembled CDS
          Length = 479

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 85/126 (67%), Gaps = 17/126 (13%)

Query: 1   MNHYVPDFEMDEDCAIPTSSTFTRPKKS--ITSEDEIMELLWQNGQVVVQSQTQMSLKKL 58
           MNH VPDFE+D++ AIP     TRPKKS  +  +DEIMELLWQNGQVV+Q Q Q S KK 
Sbjct: 1   MNHCVPDFEVDDEDAIP----LTRPKKSAAMVEDDEIMELLWQNGQVVMQIQNQRSFKKS 56

Query: 59  PHSKY--DDAVLPVEASNTREIRSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQDFC 116
             SK+   DAVLP E S   +IRS+    +    LFMQEDEMASWLHYPL+      DFC
Sbjct: 57  QPSKFPIQDAVLPPEQS---KIRSSAPVDESSAQLFMQEDEMASWLHYPLD------DFC 107

Query: 117 ADLLYP 122
           ADLL P
Sbjct: 108 ADLLDP 113


>GSVIVT01020814001 assembled CDS
          Length = 544

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 25/126 (19%)

Query: 1   MNH-YVPDFEMDEDCAIPTSSTFTRPKKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLP 59
           MNH  +PD+ ++ D  +      T  KK +  E E++ELLW+NGQVV+ SQTQ      P
Sbjct: 1   MNHPLLPDWNIEGDVPV------TNQKKPMGQEHELVELLWRNGQVVLHSQTQRKSGLAP 54

Query: 60  H-----SKYDDAVLPVEASNTREIRSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQD 114
           +      K+D  +L       R   S            +Q++E  SW+ YPL+D+  D++
Sbjct: 55  NESKQVQKHDQTML-------RNGGSCGNWSN-----LIQDEESISWIQYPLDDS-LDKE 101

Query: 115 FCADLL 120
           FC++L 
Sbjct: 102 FCSNLF 107


>GSVIVT01031338001 assembled CDS
          Length = 573

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 28  SITSEDEIMELLWQNGQVVVQSQTQMSLKKLPHSKYDDAVLPVEASNTREIRSTQEHHQQ 87
           S   E++ +EL+W+ GQ+++Q Q+  + K    + +         S+T + R     H  
Sbjct: 25  SFGPENDFVELVWEGGQIMMQGQSSRARKSPLSNSF--------PSHTPKPRDKDTGHGT 76

Query: 88  QQHLFMQEDEMASWLHYPLNDTNFDQDFCADLL 120
              +  Q+D+M  WL+YP+ D +   D+C+D L
Sbjct: 77  NSKMGNQDDDMVPWLNYPI-DESLQHDYCSDFL 108