Jatropha Genome Database

JcCB0142901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0142901.10 + phase: 0 /pseudo/partial
         (355 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009647001 assembled CDS                                       393   e-110

>GSVIVT01009647001 assembled CDS
          Length = 857

 Score =  393 bits (1009), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/222 (85%), Positives = 196/222 (88%), Gaps = 16/222 (7%)

Query: 150 IHEVMHVLGFDPHAFAHFRDDRKRRRGQVTEQVMDEKLGRMVTRVVLPRVVMHSRHHYGA 209
           IHEVMHVLGFDPHAFAHFRD+RKRRR QV EQ +DEKLGR VTRVVLPRVVMHSR+HYGA
Sbjct: 304 IHEVMHVLGFDPHAFAHFRDERKRRRAQVIEQTVDEKLGRTVTRVVLPRVVMHSRYHYGA 363

Query: 210 FSENFTGLELEDGG----EGAH------------QSVDTRSVVSKMTLALLEDSGWYQAN 253
           FSENFTGLELEDGG     G+H             SVDTRSVVSKMTLALLEDSGWY AN
Sbjct: 364 FSENFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYHAN 423

Query: 254 YSMADRLDWGRNQGTDFVTLPCNLWKGAYHCNTTQLSGCTYNREAEGYCPIVSYTGDLPQ 313
           YSMADRLDWGRNQGT+FVT PCNLWKGAYHCNTTQ SGCTYNREAEGYCPIVSY+GDLPQ
Sbjct: 424 YSMADRLDWGRNQGTEFVTSPCNLWKGAYHCNTTQSSGCTYNREAEGYCPIVSYSGDLPQ 483

Query: 314 WARYFPQPNKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDR 355
           WARYFPQ NKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDR
Sbjct: 484 WARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDR 525