Jatropha Genome Database

JcCB0142841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0142841.10 + phase: 2 /pseudo/partial
         (139 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025282001 assembled CDS                                       189   4e-49
GSVIVT01037549001 assembled CDS                                        63   5e-11
GSVIVT01025883001 assembled CDS                                        60   2e-10
GSVIVT01025881001 assembled CDS                                        59   7e-10
GSVIVT01025879001 assembled CDS                                        57   3e-09

>GSVIVT01025282001 assembled CDS
          Length = 1301

 Score =  189 bits (479), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/109 (81%), Positives = 97/109 (88%)

Query: 31   GWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD 90
            G LYT GPG+YKIPSINDVP KF VSLLKG PN KAIHSSKAVGEPPFFLAS+VFFAIKD
Sbjct: 1193 GCLYTCGPGSYKIPSINDVPLKFDVSLLKGAPNPKAIHSSKAVGEPPFFLASSVFFAIKD 1252

Query: 91   AIKAARAEVGHHEWFPLDNPATPERIRMACLDEFTAPFINSDYRPKLSV 139
            AI AAR EVG+ +WFPLDNPATPER+RMACLDEF   F++SD+RPKLSV
Sbjct: 1253 AIVAARREVGNKDWFPLDNPATPERVRMACLDEFAMQFVSSDFRPKLSV 1301


>GSVIVT01037549001 assembled CDS
          Length = 1219

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 30   QGWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIK 89
            +G + T G   YKIP+I+ +P +F V +L    + K + SSKA GEPP  LA +V  A +
Sbjct: 1108 EGLVVTEGTWTYKIPTIDTIPKQFNVEILNSGHHTKRVLSSKASGEPPLLLAVSVHCATR 1167

Query: 90   DAIKAARAEV-------GHHEWFPLDNPATPERIRMACLDEFTAPFINS 131
             AI+ AR ++            F L+ PAT   ++  C  E    ++ S
Sbjct: 1168 AAIREARQQLLSWTGLCKSDLTFQLEVPATMPVVKNLCGLENVESYLQS 1216


>GSVIVT01025883001 assembled CDS
          Length = 771

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 31  GWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD 90
           G + T G   YKIP+++ +P +F V ++    + K + SSKA GEPP  LA +V  A + 
Sbjct: 661 GLVVTKGTWTYKIPTVDTIPKQFNVEIMNSGQHKKRVLSSKASGEPPLLLAVSVHCATRA 720

Query: 91  AIKAARAEV-------GHHEWFPLDNPATPERIRMAC 120
           AI+ AR ++            F L+ PAT   ++  C
Sbjct: 721 AIREARQQLLRWTGLNKSDSTFQLEVPATMPVVKKLC 757


>GSVIVT01025881001 assembled CDS
          Length = 1096

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 11/110 (10%)

Query: 31   GWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD 90
            G + T G   YKIP+I+ +P +F V +L    +   + SSKA GEPP  LA +V  A + 
Sbjct: 986  GLVVTEGTWTYKIPTIDTIPKQFNVEVLNSGHHKNRVLSSKASGEPPLLLAVSVHCATRA 1045

Query: 91   AIKAARAEVGHHEW---------FPLDNPATPERIRMACLDEFTAPFINS 131
            AI+ AR ++    W         F L+ PAT   ++  C  E    ++ S
Sbjct: 1046 AIREARQQL--LSWTGLTKCDSTFQLEVPATMPVVKELCGLENVESYLQS 1093


>GSVIVT01025879001 assembled CDS
          Length = 1380

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%)

Query: 31   GWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD 90
            G + T G   YKIP+I+ VP +F V +L    +   + SSKA GEPP  LA +V  A + 
Sbjct: 1248 GLVVTEGTWTYKIPTIDTVPKQFNVEVLNSGHHKNRVLSSKASGEPPLLLAVSVHCATRA 1307

Query: 91   AIKAARAEV 99
            AI+ AR ++
Sbjct: 1308 AIREARQQL 1316