Jatropha Genome Database

JcCB0140211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0140211.10 - phase: 2 /partial
         (421 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014248001 assembled CDS                                       695   0.0  

>GSVIVT01014248001 assembled CDS
          Length = 463

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/387 (85%), Positives = 352/387 (90%), Gaps = 1/387 (0%)

Query: 35  TKRNGRDFPSDDGDYQSGFGNSFESEAISGALPRGQNSPLLCPYGLYAEQLSGSSFTSPR 94
           +K N  D PSD   YQ GFGN   SEAI+GALPRGQN+PL CP+GLYAEQ+SG+ FT+PR
Sbjct: 7   SKTNDSDPPSDL-QYQFGFGNHLSSEAIAGALPRGQNNPLTCPFGLYAEQISGTPFTAPR 65

Query: 95  KLNQRSWFYRIKPSVTHEPFKPRIPSNEKLASEFDKTNSRTTPTQLRWKPMEIPDSPTDF 154
           K NQ SW YRIKPSVTHEPFKPR+PS+ KL SEF+++NS T PTQLRWKP+EIPDSPTDF
Sbjct: 66  KQNQFSWLYRIKPSVTHEPFKPRVPSHGKLVSEFNQSNSSTNPTQLRWKPVEIPDSPTDF 125

Query: 155 VDGLYTVCGAGSSFLRHGFAIHMYTANKSMDNCAFCNADGDFLIVPQKGRLWITTECGKL 214
           +DGLYTVCGAGSSFLRHG+AIHMYTANKSMDNCAFCNADGDFLIVPQKGRL ITTECGKL
Sbjct: 126 IDGLYTVCGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLIVPQKGRLSITTECGKL 185

Query: 215 QVTPGEIVVLPQGFRFAVDLPDGPSRGYACEIFGTHFQLPDLGPIGGNGLAAPRDFLVPK 274
           QV+PGEIVVLP GFRF VDLPDGPSRGY  EIFG HFQLPDLGPIG NGLAA RDFLVP 
Sbjct: 186 QVSPGEIVVLPHGFRFVVDLPDGPSRGYVAEIFGAHFQLPDLGPIGANGLAASRDFLVPV 245

Query: 275 AWFEEASRPGYTIIQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLKKFCPYNTVLFDH 334
           AW+EE SRPGYTI+QKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDL KFCP NTVL DH
Sbjct: 246 AWYEECSRPGYTIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPVNTVLKDH 305

Query: 335 SDPSINTVLTAPTDKPGVALLDFVIFPSRWVVAEHTFRPPYYHRNCMSEFMGLIYGGYEA 394
           +DPSINTVLTAPTDKPGVALLDFVIFP RW+VAEHTFRPPYYHRNCMSEFMGLIYGGYEA
Sbjct: 306 ADPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEA 365

Query: 395 KADGFIPGAASLHSCMTPHGPDTKTYE 421
           KADGF+PG ASLHSCMTPHGPDTKT+E
Sbjct: 366 KADGFLPGGASLHSCMTPHGPDTKTFE 392