Jatropha Genome Database

JcCB0139821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0139821.10 + phase: 0 /pseudo/partial
         (353 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019608001 assembled CDS                                       566   e-162

>GSVIVT01019608001 assembled CDS
          Length = 724

 Score =  566 bits (1459), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 269/310 (86%), Positives = 293/310 (94%), Gaps = 1/310 (0%)

Query: 13  VASLRGSISSFQEQASC-KTRVSSIAAPFNLCQPFNLQISLSTPLKIDYHSPEEEIAFGP 71
           VAS RGSISSFQEQAS  + +VSS+A P +LCQPFNL++SLS PLK+ YH PEEEIAFGP
Sbjct: 277 VASFRGSISSFQEQASSSRPKVSSVAVPVSLCQPFNLKMSLSGPLKVKYHLPEEEIAFGP 336

Query: 72  GCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIANGDEQVKADAIRIGR 131
            CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIA GDEQVKADAIRIG+
Sbjct: 337 SCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIAEGDEQVKADAIRIGQ 396

Query: 132 YTNGQFPTDSKEFAKRIFYTVFMGSENSSEATRQRAKVLANEIGSWHLDVSIDGVVSALL 191
           YT+GQFPTDSKEFAKRIFYTVFMGSENSSEATR+RAKVLA EIGSWHLD+ IDGV++ALL
Sbjct: 397 YTDGQFPTDSKEFAKRIFYTVFMGSENSSEATRKRAKVLAEEIGSWHLDICIDGVITALL 456

Query: 192 SLFQTLTGKRPRYKVDGGSDVENLGLQNIQARIRMVLAFMLASLLPWVHNKSGFYLVLGS 251
           SLFQTLTGKRPRYKVDGGS++ENLGLQNIQARIRMVLAFMLASL+PWVHNK+GFYLVLGS
Sbjct: 457 SLFQTLTGKRPRYKVDGGSNIENLGLQNIQARIRMVLAFMLASLMPWVHNKAGFYLVLGS 516

Query: 252 SNVDEGLRGYLTKYDCSSADINPIGSISKQDLRAFLRWAAIHLGYSSLAEVESAPPTAEL 311
           +NVDE LRGYLTKYDCSSADINPIG ISKQDLR FL+WAA+HLGY SLAE+E+APPTAEL
Sbjct: 517 ANVDEALRGYLTKYDCSSADINPIGGISKQDLRGFLQWAAVHLGYPSLAEIEAAPPTAEL 576

Query: 312 EPIRSNYSQV 321
           EPIR+NYSQ+
Sbjct: 577 EPIRANYSQL 586