Jatropha Genome Database

JcCB0139081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0139081.10 + phase: 1 /partial
         (140 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021226001 assembled CDS                                       181   1e-46
GSVIVT01020720001 assembled CDS                                       154   1e-38
GSVIVT01008048001 assembled CDS                                       112   4e-26
GSVIVT01008196001 assembled CDS                                       108   6e-25
GSVIVT01029951001 assembled CDS                                        94   2e-20
GSVIVT01011353001 assembled CDS                                        86   5e-18
GSVIVT01009075001 assembled CDS                                        79   5e-16

>GSVIVT01021226001 assembled CDS
          Length = 244

 Score =  181 bits (458), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/135 (65%), Positives = 101/135 (74%), Gaps = 7/135 (5%)

Query: 5   YWNTHIEHFRWSRYQYIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSGGNIHCF 64
           Y   H++ + W        LS       ARPAKLVRDCEM APCGTT+LYP++GGNIHCF
Sbjct: 116 YGTLHVKSYDWLDLPGTADLSQ------ARPAKLVRDCEMSAPCGTTILYPTNGGNIHCF 169

Query: 65  KALTPCALFDVLSPPYSSEDGRHCSYFRRVPARVLPEGAAELCGIQPSEVAWLEETPPPE 124
           KA+TPCALFDVLSPPYSSEDGRHCSYFR+ P + LP G  +LCGI+PSEV WLEE  PPE
Sbjct: 170 KAITPCALFDVLSPPYSSEDGRHCSYFRKSPRKDLP-GIDQLCGIKPSEVVWLEEIQPPE 228

Query: 125 NFVVQRGLYKGPNIR 139
           N VV RG Y+GP IR
Sbjct: 229 NVVVLRGQYEGPIIR 243


>GSVIVT01020720001 assembled CDS
          Length = 239

 Score =  154 bits (389), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 88/107 (82%), Gaps = 1/107 (0%)

Query: 33  ARPAKLVRDCEMIAPCGTTVLYPSSGGNIHCFKALTPCALFDVLSPPYSSEDGRHCSYFR 92
           ARPA+LVRD EM APCGTT+LYPSSGGNIH F+A+TPCA+ D+LSPPYSSE+GRHC+YFR
Sbjct: 133 ARPAELVRDTEMTAPCGTTILYPSSGGNIHTFEAVTPCAILDILSPPYSSENGRHCTYFR 192

Query: 93  RVPARVLPEGAAELCGIQPSEVAWLEETPPPENFVVQRGLYKGPNIR 139
             P + LP G  +L G+  S+V WLEE  PP+NFV++RG Y+GP IR
Sbjct: 193 NSPRKDLP-GELQLNGMTVSDVTWLEEFQPPDNFVIRRGQYRGPVIR 238


>GSVIVT01008048001 assembled CDS
          Length = 364

 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 6/140 (4%)

Query: 5   YWNTHIEHFRW------SRYQYIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSG 58
           + + HI+ + W      S+ Q          +   R AK+  D ++ APC T+VLYP++G
Sbjct: 222 FGSMHIKSYDWVADVSYSKNQNTHHEDLAALQHEPRLAKVHADSDLTAPCKTSVLYPNAG 281

Query: 59  GNIHCFKALTPCALFDVLSPPYSSEDGRHCSYFRRVPARVLPEGAAELCGIQPSEVAWLE 118
           GN+HCF ALTPCA+ DVL PPYS ++GRHC+Y+   P          L   +     WL+
Sbjct: 282 GNMHCFTALTPCAMLDVLGPPYSDDEGRHCTYYNDFPYATFSGDTGSLQAEEMEGCGWLK 341

Query: 119 ETPPPENFVVQRGLYKGPNI 138
           E   PE+FVV   +Y+GP  
Sbjct: 342 EMEKPESFVVVGAMYRGPQF 361


>GSVIVT01008196001 assembled CDS
          Length = 251

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 3/137 (2%)

Query: 5   YWNTHIEHFRWSRYQYIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSGGNIHCF 64
           Y + H++ + W     IQ+     + FT R AKL  D  + AP GT++LYP SGGN+H F
Sbjct: 117 YGSLHVKAYDWVEPARIQKGKGPGY-FTVRLAKLAVDKVLTAPVGTSILYPKSGGNLHYF 175

Query: 65  KALTPCALFDVLSPPYSSEDGRHCSYFRRVPARVLPEG-AAELCGIQPSEVAWLEETPPP 123
            A+TPCA+ DVL+PPY    GR C+Y+   P      G  AE+ G +  + AWL E   P
Sbjct: 176 TAITPCAVLDVLAPPYQEASGRKCTYYHDYPYSSFSTGNEAEISG-KEEDYAWLAEIETP 234

Query: 124 ENFVVQRGLYKGPNIRL 140
           ++  +++G+Y GP I++
Sbjct: 235 DDLYMRQGVYAGPAIQV 251


>GSVIVT01029951001 assembled CDS
          Length = 275

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 62/109 (56%), Gaps = 4/109 (3%)

Query: 34  RPAKLVRDCEMIAPCGTTVLYPSSGGNIHCFKALTPCALFDVLSPPYSSEDGRHCSYFRR 93
           R A+L  D    APC T+VLYP+SGGNIH F A+TPCA+ DVL PPYS +DGR CSY++ 
Sbjct: 162 RLARLKADSVFTAPCNTSVLYPTSGGNIHAFTAITPCAVLDVLGPPYSKKDGRDCSYYKD 221

Query: 94  VPARVLPEGAAEL----CGIQPSEVAWLEETPPPENFVVQRGLYKGPNI 138
            P      G A       G +     WLEE   PE+  +    Y GP I
Sbjct: 222 SPYTPFSNGEARTRKEEDGEEEERYGWLEEVEMPEDSKMDWTEYLGPQI 270


>GSVIVT01011353001 assembled CDS
          Length = 279

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 58/103 (56%)

Query: 36  AKLVRDCEMIAPCGTTVLYPSSGGNIHCFKALTPCALFDVLSPPYSSEDGRHCSYFRRVP 95
           AK+  D +  APC +++LYP+ GGN+H F ALT CA+ DVL PPYS  +GR C+Y+   P
Sbjct: 174 AKVKVDADFTAPCNSSILYPADGGNMHRFTALTACAVLDVLGPPYSDPEGRDCTYYFDFP 233

Query: 96  ARVLPEGAAELCGIQPSEVAWLEETPPPENFVVQRGLYKGPNI 138
                     +   +    AWL+E    E+F V   +Y GP I
Sbjct: 234 FTNFSVDGVSVPEEEREGYAWLQEREKLEDFAVVGAVYNGPMI 276


>GSVIVT01009075001 assembled CDS
          Length = 242

 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 19/134 (14%)

Query: 5   YWNTHIEHFRWSRYQYIQRLSSFFWKFTARPAKLVRDCEMIAPCGTTVLYPSSGGNIHCF 64
           Y + H++ + W + +            T   A +V +    AP   ++L+P SGGNIH F
Sbjct: 117 YGSVHVKAYDWVKAENSSCR-------TIGLAGIVTNSIFNAPREPSILFPRSGGNIHSF 169

Query: 65  KALTPCALFDVLSPPYSSEDGRHCSYFRRVPARVLPEGAAELCGIQPSEVAWLEETPPPE 124
            ALTPCA+ DVL+PPYS E GR  +YF  +P   LP                LEE   P+
Sbjct: 170 TALTPCAILDVLAPPYSEEFGRPSTYFNDMPIPTLP------------GYVILEERDLPD 217

Query: 125 NFVVQRGLYKGPNI 138
           + VV R  Y GP++
Sbjct: 218 DLVVTRAPYLGPSV 231