Jatropha Genome Database

JcCB0138801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0138801.10 + phase: 0 /partial
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013241001 assembled CDS                                       174   1e-44
GSVIVT01018382001 assembled CDS                                       167   2e-42

>GSVIVT01013241001 assembled CDS
          Length = 397

 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 89/101 (88%)

Query: 51  VKCDMAEPVNVGNGKPSIPILNERTLPKFLESARMEKSVNRNSTRLKLFSGSANPALSQE 110
           +KCDM E +   NGKP +P+LN+RT P FLES RMEKSV+RNS RLK+FSG+ANP LS+E
Sbjct: 42  IKCDMNESLKFENGKPCVPVLNDRTFPSFLESRRMEKSVSRNSDRLKIFSGTANPTLSKE 101

Query: 111 IAWYMGLELGKINIKRFADGEIYVQLQESVRGCDVYLLQPT 151
           IAWYMG ELGKINIKRFADGEIYVQL+ESVRGCDVYL+QPT
Sbjct: 102 IAWYMGKELGKINIKRFADGEIYVQLEESVRGCDVYLVQPT 142


>GSVIVT01018382001 assembled CDS
          Length = 403

 Score =  167 bits (422), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 89/102 (87%)

Query: 50  SVKCDMAEPVNVGNGKPSIPILNERTLPKFLESARMEKSVNRNSTRLKLFSGSANPALSQ 109
           +V+C++ EPV   NG+P IP+L E TLP FL S  ME+++N+N TRL++FSG+ANPALSQ
Sbjct: 41  TVRCNLVEPVKFNNGRPFIPVLREPTLPNFLSSKDMEETINKNDTRLRIFSGTANPALSQ 100

Query: 110 EIAWYMGLELGKINIKRFADGEIYVQLQESVRGCDVYLLQPT 151
           EIA YMGLELGKINIKRFADGEIYVQLQESVRGCDVYL+QPT
Sbjct: 101 EIACYMGLELGKINIKRFADGEIYVQLQESVRGCDVYLVQPT 142