Jatropha Genome Database

JcCB0137811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0137811.20 + phase: 1 /TE/partial
         (481 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028612001 assembled CDS                                       161   5e-40
GSVIVT01014104001 assembled CDS                                       138   6e-33
GSVIVT01017026001 assembled CDS                                       106   2e-23
GSVIVT01034745001 assembled CDS                                       101   6e-22
GSVIVT01024357001 assembled CDS                                        92   4e-19

>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score =  161 bits (408), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 165/333 (49%), Gaps = 32/333 (9%)

Query: 4   ISIGRFDDEGFCSTFRNSPWKLTEGSFVVAKDRKLH----VMHAKLSQDTLSVVENDST- 58
           +SIG+  ++G    F++   K+      +  D K+      M   LSQ   S   N  T 
Sbjct: 389 LSIGQLQEKGLTILFQHGKCKVFHSQKGLIMDTKMSSNRMFMLYALSQPISSTCFNTVTE 448

Query: 59  --VELWHKRLRHMS---KKTLARKNVLPGLDEVHLDK--CPDCMAGKQNRVAFKIIPPSR 111
             ++LWH R  H+S    KTL ++ ++ GL +       C DC+ GKQ+R +       R
Sbjct: 449 DILQLWHCRYGHLSFQGLKTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHRSSIPKKSNWR 508

Query: 112 MKKVLNLIHSDLCGPLM-MXYGGNRYFVTFIDDHSRKTWVYTLKSSKPGXET-------V 163
             ++L L+H+D+CGP+  +     RY +TF DD SRKTWVY L                V
Sbjct: 509 AAEILQLVHADICGPINPISNSKKRYLLTFTDDFSRKTWVYFLVEKSEAFAVFKSFKTYV 568

Query: 164 RQEAEVY-----QDRX--WWRIHWAIXCFLQRAWHSHQTTPPKTPQLNGLAERMNRTLME 216
            +E   +      DR   +    +AI C +       Q T   TPQ NG+AER NRT+M 
Sbjct: 569 EKETSSFLRCLRTDRGGEFTSQEFAIFCDVHGI--RRQLTAAYTPQQNGVAERKNRTIMN 626

Query: 217 GVRYLLSHAKLFKRFWGEALLTAVY---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCK 273
            VR +LS  KL K FW EA+   V+   RSP F +Q  TPE  W     S D+ RVFGC 
Sbjct: 627 MVRSMLSAKKLPKTFWPEAVNWTVHVLNRSPTFAVQNKTPEEAWGKLKPSVDYFRVFGCL 686

Query: 274 AFVHVPKDERSKLNVKTRQCVFIGYGQDQCGYK 306
           + VHVP  +R+KL+ K+  CV +G  ++   Y+
Sbjct: 687 SHVHVPDSKRTKLDDKSFSCVLLGVSEESKAYR 719


>GSVIVT01014104001 assembled CDS
          Length = 1354

 Score =  138 bits (347), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 159/353 (45%), Gaps = 61/353 (17%)

Query: 4    ISIGRFDDEGFCSTFRNSPWKLTEGSFVVAKD----------------RKLHVMHAKLSQ 47
            +S+ + D  G+   F +    L   S  +                   + L  +H+ +  
Sbjct: 735  VSLSKLDATGYSVLFSSGQLSLMLNSVTIGSGILCDGLYKISLNHEFAQALITLHSNVGS 794

Query: 48   DTLSVVENDSTVELWHKRLRHMSKKT---LARKNVLPGLDEVHLDKCPDCMAGKQNRVAF 104
                + EN S   LWH+RL H+S++    L ++ +L  LD      C +C+ GKQ +   
Sbjct: 795  KRGLINENSSI--LWHRRLGHISRERIERLVKEGILQNLDFTDFHVCVNCIKGKQTKHTK 852

Query: 105  KIIPPSRMKKVLNLIHSDLCGPLMMX-YGGNRYFVTFIDDHSRKTWVYTLKS-------- 155
            K    +R  ++L +IH+D+CGPL +  + G +YF+TFIDD SR  +VY +          
Sbjct: 853  K--GATRSNELLEIIHTDICGPLSIPCFTGEKYFITFIDDLSRYGYVYLMHEKSQAIDIF 910

Query: 156  -------------------SKPGXETVRQEAEVYQDRXWWRIHWAIXCFLQRAWHSHQTT 196
                               S  G E   +  E  Q+            FL++     Q T
Sbjct: 911  EMFITEVERQLDKKIKIVRSDQGGEYYGRYDESGQNP------GPFAKFLEKHGIRAQYT 964

Query: 197  PPKTPQLNGLAERMNRTLMEGVRYLLSHAKLFKRFWGEALLTAVY---RSPCFPLQYDTP 253
             P TPQ NG+AER NRTLME VR ++S++ +    WGEAL TA+Y   R P   +   TP
Sbjct: 965  MPGTPQQNGVAERRNRTLMEMVRSMMSYSSVPISLWGEALKTAMYILNRVPSKAVP-KTP 1023

Query: 254  ERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKLNVKTRQCVFIGYGQDQCGYK 306
              +W+G+  S  H+ ++GC A   +      KL+ +T    FIGY     GY+
Sbjct: 1024 FELWTGRKPSLRHIHIWGCPAEARIYNPHEKKLDSRTVSGYFIGYPDKSKGYR 1076


>GSVIVT01017026001 assembled CDS
          Length = 1273

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 141/300 (47%), Gaps = 35/300 (11%)

Query: 34   KDRKLHVMHAKLSQDTLSVVENDS---TVELWHKRLRHMS---------KKTLARKNVLP 81
            +D  L+V+  + +   +SV++N S   + +LWH RL H++         K  L+  ++LP
Sbjct: 976  RDGGLYVLE-RGNSAFISVLKNKSLRASYDLWHARLGHVNYFVISFLHKKGHLSLMSLLP 1034

Query: 82   GLDEVHLDKCPDCMAGKQNRVAFKIIPPSRMKKVLNLIHSDLCGPL-MMXYGGNRYFVTF 140
                     C  C   K +R+ +      R   VL+LIH DL GP  +    G  Y+V F
Sbjct: 1035 SPS-----LCSTCQLAKNHRLPYSR-NEHRSSHVLDLIHCDLPGPSPIKSNSGFLYYVIF 1088

Query: 141  IDDHSRKTWVYTLKSSKPGXETVRQEAEVYQDRXWWRI---------HWAIXCF---LQR 188
            IDD+SR TW+Y LK      +   Q  +  +++ + RI          +   CF   L+ 
Sbjct: 1089 IDDYSRFTWLYPLKFKSDFFDIFLQFKKFVENQHFARIKVFQSDGGAEFTNTCFKAHLRT 1148

Query: 189  AWHSHQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKLFKRFWGEALLTAVY---RSPC 245
            +   HQ + P TP  NG AER +R + E    LL H+ L  RFW +A  TA Y   R P 
Sbjct: 1149 SGIHHQLSCPYTPAQNGRAERKHRHVTETGLTLLFHSHLSPRFWVDAFSTATYIINRLPT 1208

Query: 246  FPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKLNVKTRQCVFIGYGQDQCGY 305
              L   +P  +  G    Y++   FGC+ +  +     +KL+ ++  C+F+GY     G+
Sbjct: 1209 PLLGGKSPFELLYGYSPHYENFHPFGCRVYPCLRDYMPNKLSPRSIPCIFLGYSPSHKGF 1268


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 110/238 (46%), Gaps = 35/238 (14%)

Query: 39  HVMHAKLSQDTLSVVENDSTVELWHKRLRHMSKKTL---ARKNVLPGLDEVHLDK--CPD 93
           HV  AK+ +   SVV        WHKR  H + K+L       ++  + E+ ++   C  
Sbjct: 453 HVFSAKIDE---SVV--------WHKRYGHFNLKSLRFMQEAGMVEDMPEISVNAQTCES 501

Query: 94  CMAGKQNRVAFKIIPPSRMKKV---LNLIHSDLCGPL-MMXYGGNRYFVTFIDDHSRKTW 149
           C  GKQ R  F   P +  KK    L LI+SD+CGP+       N YF  FIDD SR TW
Sbjct: 502 CELGKQQRQPF---PQNMSKKATHKLELINSDICGPMSTASLSNNVYFALFIDDLSRMTW 558

Query: 150 VYTLKSSKPGXETVR-----------QEAEVYQ-DRXWWRIHWAIXCFLQRAWHSHQTTP 197
           VY LK+        +           Q  +V + D     I   +  F Q A   HQ   
Sbjct: 559 VYFLKTKSQVLSVFKSFKKMVETQSGQNVKVLRTDNGGEYISKELNVFCQEAGIVHQLIA 618

Query: 198 PKTPQLNGLAERMNRTLMEGVRYLLSHAKLFKRFWGEALLTAVYRSPCFPLQYDTPER 255
           P +PQ NG+ ER NRT+ME  R +L   KL K  W EA+ T+VY     P +  T ER
Sbjct: 619 PYSPQQNGVFERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSGTIER 676


>GSVIVT01024357001 assembled CDS
          Length = 851

 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 3/129 (2%)

Query: 181 AIXCFLQRAWHSHQTTPPKTPQLNGLAERMNRTLMEGVRYLLSHAKLFKRFWGEALLTAV 240
           A  CF  +   +   T   TPQ NG+ ER N+T+ME  + +L    L K FW EA+ T V
Sbjct: 496 AFLCFRLKQQPTELLTIAYTPQQNGVVERKNQTVMEMAKAMLYEKGLPKFFWVEAVNTVV 555

Query: 241 Y---RSPCFPLQYDTPERVWSGKDVSYDHLRVFGCKAFVHVPKDERSKLNVKTRQCVFIG 297
           Y   R P   L   T    WSG++ S  H +VFGC  +  VPK+ RSKL+  + +C+F+G
Sbjct: 556 YLLNRCPTKALLNKTLIEAWSGRNPSVRHFKVFGCLCYSQVPKERRSKLDETSEKCIFMG 615

Query: 298 YGQDQCGYK 306
           Y     GY+
Sbjct: 616 YSSQSKGYR 624