Jatropha Genome Database

JcCB0137471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0137471.10 - phase: 0 /partial
         (130 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033607001 assembled CDS                                       246   2e-66
GSVIVT01011450001 assembled CDS                                        85   9e-18

>GSVIVT01033607001 assembled CDS
          Length = 466

 Score =  246 bits (629), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/128 (91%), Positives = 124/128 (96%)

Query: 2   QDNAQKIAEFLAAHPQVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSFLTGSLALSKHIVE 61
           Q+NAQKIAEFL++HP+VKKVNYAGLP HPGR LHYSQAKGAGSVLSFLTGSL  SK+IVE
Sbjct: 338 QENAQKIAEFLSSHPRVKKVNYAGLPDHPGRSLHYSQAKGAGSVLSFLTGSLEFSKYIVE 397

Query: 62  TTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLIRISVGIEDVNDLIADL 121
           TTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDL+RISVGIED+NDLIADL
Sbjct: 398 TTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLVRISVGIEDINDLIADL 457

Query: 122 DYALRTGP 129
           DYALRTGP
Sbjct: 458 DYALRTGP 465


>GSVIVT01011450001 assembled CDS
          Length = 497

 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 4   NAQKIAEFLAAHPQVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSF-LTGSLALSKHIVET 62
            A ++A+ L AHP+VK V Y GLP HP   +   Q  G G V+SF + G L  +   V+ 
Sbjct: 372 TALRMAKILEAHPKVKCVYYPGLPSHPEHHIAKRQMTGFGGVVSFEVDGDLTTTIKFVDA 431

Query: 63  TKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLIRISVGIEDVNDLIADLD 122
            K   I  SFG  +S++  P  MS+  +  + R   G+ ++L+R S G+ED  DL AD+ 
Sbjct: 432 LKIPYIAPSFGGCESIVDQPAIMSYWDLNQSERAKYGIQDNLVRFSFGVEDFEDLKADIL 491

Query: 123 YALRT 127
            AL +
Sbjct: 492 QALES 496