Jatropha Genome Database

JcCB0136381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0136381.10 - phase: 0 /partial
         (328 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022530001 assembled CDS                                       410   e-115
GSVIVT01029753001 assembled CDS                                       345   1e-95

>GSVIVT01022530001 assembled CDS
          Length = 424

 Score =  410 bits (1054), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/223 (88%), Positives = 206/223 (92%)

Query: 1   MDRLKAPARLMIVSDLDHTMVDHHDPENMSLLRFNALWEAHYRHDSLLVFSTGRSPTLYK 60
           MDRL  PARLMIVSDLDHTMVDHHD EN+SLLRFNALWEA+YRHDSLLVFSTGRSPTLYK
Sbjct: 1   MDRLNNPARLMIVSDLDHTMVDHHDSENLSLLRFNALWEANYRHDSLLVFSTGRSPTLYK 60

Query: 61  QLRKEKPMLTPDITIMSVGTEITYGNKMVPDNGWVEILNQKWDKNIVTEEASKFPELNLQ 120
           QLRKEKPMLTPDITIMSVGTEITYGN MVPDNGWV+ LNQKWDKNIV EE  KFPEL LQ
Sbjct: 61  QLRKEKPMLTPDITIMSVGTEITYGNSMVPDNGWVQFLNQKWDKNIVMEETRKFPELKLQ 120

Query: 121 SETELRPHKVSFYVDKDKAQTVIKALSEIFQKRGLDVKIIYSGGMDLDILPRGAGKGQAL 180
           SETE RPHKVSFYVDKDKA+ V++ALSE+ +KRGLDVKIIYSGGMDLDILP+GAGKGQAL
Sbjct: 121 SETEQRPHKVSFYVDKDKARDVMRALSELLEKRGLDVKIIYSGGMDLDILPQGAGKGQAL 180

Query: 181 AYLHKKFKTEGKLPNKTLVCGDSGNDAELFSIPDVYGVMPGNA 223
           AYL KKFK EGKLPN TLVCGDSGNDAELFSIPDVYGVM  NA
Sbjct: 181 AYLLKKFKAEGKLPNNTLVCGDSGNDAELFSIPDVYGVMVSNA 223



 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 70/96 (72%), Gaps = 1/96 (1%)

Query: 220 PGNAVVKFFLFLEKWRRAEIENCEMYLASVKADCDPSGILIHPSGAELTLHDAVNGLRSH 279
           PG+ +VKF+LF E+WRRAE+EN +  L  +KA C PSG+ IHPSG E  LHD ++ +++ 
Sbjct: 283 PGHEIVKFYLFYERWRRAEVENSDQSLEKLKAVCYPSGVFIHPSGVERPLHDCISAMKNC 342

Query: 280 YSEKKGKPFRIWVDQVIPTKIGSDAWLVKFNQWESS 315
           Y +K+ K  R+WVD+V   +I SD WLVKF++WE S
Sbjct: 343 YGDKR-KSLRVWVDRVSSAQISSDTWLVKFDKWELS 377


>GSVIVT01029753001 assembled CDS
          Length = 425

 Score =  345 bits (886), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 166/223 (74%), Positives = 188/223 (84%)

Query: 1   MDRLKAPARLMIVSDLDHTMVDHHDPENMSLLRFNALWEAHYRHDSLLVFSTGRSPTLYK 60
           M  + +  RLM+VSDLD TMVDH+D EN SLLRFNALWEA+YRH+SLLVFSTGRSP +YK
Sbjct: 1   MAGVNSCPRLMVVSDLDLTMVDHYDSENHSLLRFNALWEANYRHNSLLVFSTGRSPAIYK 60

Query: 61  QLRKEKPMLTPDITIMSVGTEITYGNKMVPDNGWVEILNQKWDKNIVTEEASKFPELNLQ 120
           QLRKEKP+L+PDIT+MSVGTEI YG  MVPDN WVE LNQ WD+N+V EE  KFPEL  Q
Sbjct: 61  QLRKEKPLLSPDITVMSVGTEIAYGESMVPDNDWVEFLNQNWDRNMVIEETRKFPELIPQ 120

Query: 121 SETELRPHKVSFYVDKDKAQTVIKALSEIFQKRGLDVKIIYSGGMDLDILPRGAGKGQAL 180
           SETE RPHKVSFY++KDKA  VIKALSE  +K GLD KIIYSGG+ LD+LP GAGKGQAL
Sbjct: 121 SETEQRPHKVSFYIEKDKAGEVIKALSESLEKNGLDFKIIYSGGIALDVLPHGAGKGQAL 180

Query: 181 AYLHKKFKTEGKLPNKTLVCGDSGNDAELFSIPDVYGVMPGNA 223
           AYL K+ KTEGK+P+ TL CGDSGNDAELFS+P+VYGVM  NA
Sbjct: 181 AYLLKRLKTEGKVPDNTLACGDSGNDAELFSVPEVYGVMVSNA 223



 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 78/113 (69%)

Query: 203 SGNDAELFSIPDVYGVMPGNAVVKFFLFLEKWRRAEIENCEMYLASVKADCDPSGILIHP 262
           S  D   FS      V PG+ +VKF+LF E+WR AE+E+ +  + ++K D  P+G+ +HP
Sbjct: 266 SPRDVPHFSECKPDNVNPGHEIVKFYLFYERWRCAEVEDTDPCMENLKVDYHPAGVFVHP 325

Query: 263 SGAELTLHDAVNGLRSHYSEKKGKPFRIWVDQVIPTKIGSDAWLVKFNQWESS 315
           SG E +LHD +N +RS Y +K+G+ F++WVD+V P ++ SD W+VKF++WE S
Sbjct: 326 SGVERSLHDCINAMRSCYGDKQGRKFQVWVDRVSPVQMSSDTWIVKFDKWELS 378