Jatropha Genome Database

JcCB0136271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0136271.10 - phase: 2 /partial
         (402 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036171001 assembled CDS                                       392   e-109
GSVIVT01036173001 assembled CDS                                       382   e-106
GSVIVT01033433001 assembled CDS                                       223   2e-58
GSVIVT01013560001 assembled CDS                                       189   1e-48
GSVIVT01013561001 assembled CDS                                       176   1e-44
GSVIVT01030325001 assembled CDS                                        91   9e-19
GSVIVT01001346001 assembled CDS                                        79   5e-15

>GSVIVT01036171001 assembled CDS
          Length = 490

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/389 (49%), Positives = 256/389 (65%), Gaps = 49/389 (12%)

Query: 3   SANERFHDEVLGKDLFKVLREKYGANLNSFVSEKLIPVAGDISCEDLGVKDSYLRDEMFK 62
           SA +R H+EV+GK+LF VLREK+ ++ NSFVS+KL PV GDISC+DLGV DS LR+EM++
Sbjct: 53  SATQRLHNEVIGKELFWVLREKWASDFNSFVSKKLTPVPGDISCDDLGVTDSNLREEMWR 112

Query: 63  EIDLVINFAATTNFDERYDIALGINTLGALHVLNFAKKCLKAKMLVHVSTAYVCGEDSGI 122
           E+D+V+N AATTNFDERYD+ALGIN LGA HVL+FAKKC+K KML+HVSTAYV GE SG+
Sbjct: 113 EVDIVVNLAATTNFDERYDVALGINALGARHVLDFAKKCVKIKMLLHVSTAYVAGEQSGL 172

Query: 123 ILEKPFTMGRPKKGTSXXXXXXXXXXXXXXXXXXXXXNASEKEITAFMKDFGIERARAFG 182
           ILE+PF MG    GT                       A+ + +T  MKDFGI+RA+  G
Sbjct: 173 ILEQPFQMGETLNGTFGLDIEEEKKLMEERLDELQSEGATREAVTLAMKDFGIQRAKMHG 232

Query: 183 WPNTYVFTKAIGEMLLMHFKKNMPLLIIRPTMITSTYKEPFPGWIEGVRTIDSVIAGYAK 242
           WPNTYVFTKA+GEMLL H K+N+PL I+RPT+++STYKEPFPGW+EG+RTIDS   GY K
Sbjct: 233 WPNTYVFTKAMGEMLLGHLKENLPLAILRPTIVSSTYKEPFPGWVEGIRTIDSFAVGYGK 292

Query: 243 GKVTCFISDPQSTLDV-------------------------------------------- 258
           G++T F+ D ++ +DV                                            
Sbjct: 293 GRLTFFLGDIEAIVDVIPADMVVNSMIVAMAAHANQPCEVIYQVGSSVKNPVRYSNLQDF 352

Query: 259 -----SANPWISKDGSPVKIQRGTILSSMARFRMYMAIRFQLPLQALKLANTMVFKKYED 313
                + NPWI+KDG  VK+ + T+LS+M  F  YMA+R+ L L+ L+  NT   + +  
Sbjct: 353 GLRYFTKNPWINKDGKAVKVGKVTVLSTMDSFHRYMALRYLLLLKGLQFVNTAFCQYFRG 412

Query: 314 TYASLNRKINLVMRLVDLYKPYVFFQGMY 342
           TY  LNR+I  ++RL++LYKPY+FF+G++
Sbjct: 413 TYTDLNRRIKFLLRLIELYKPYLFFKGVF 441


>GSVIVT01036173001 assembled CDS
          Length = 490

 Score =  382 bits (981), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/389 (47%), Positives = 252/389 (64%), Gaps = 49/389 (12%)

Query: 3   SANERFHDEVLGKDLFKVLREKYGANLNSFVSEKLIPVAGDISCEDLGVKDSYLRDEMFK 62
           SA +R H+EVLGK+LF+VL++K+G+NLNSF+SEK+ P+ GDISCE+LGV +  LR+E+++
Sbjct: 53  SATQRLHNEVLGKELFRVLKDKWGSNLNSFISEKVTPIPGDISCENLGVTNLNLREEIWR 112

Query: 63  EIDLVINFAATTNFDERYDIALGINTLGALHVLNFAKKCLKAKMLVHVSTAYVCGEDSGI 122
           E+D+++N AATT FDERYD+ALGINTLGA HVLNF+KKC+K KML+HVSTAYV GE  G+
Sbjct: 113 EVDVILNLAATTKFDERYDVALGINTLGASHVLNFSKKCVKLKMLLHVSTAYVSGEREGL 172

Query: 123 ILEKPFTMGRPKKGTSXXXXXXXXXXXXXXXXXXXXXNASEKEITAFMKDFGIERARAFG 182
           ILE P  MG+   G S                      A+E+ I+  MK+ G++RA  +G
Sbjct: 173 ILESPLKMGKALNGASGLDVDKEKKLVEEGLNELNELQATEETISLTMKELGMKRALMYG 232

Query: 183 WPNTYVFTKAIGEMLLMHFKKNMPLLIIRPTMITSTYKEPFPGWIEGVRTIDSVIAGYAK 242
           WPNTYVFTKA+GEMLL  FK+N+PL+I+RPT+ITSTY EPF GWIEG+RTID+V+AGY K
Sbjct: 233 WPNTYVFTKAMGEMLLGQFKENLPLVILRPTIITSTYMEPFSGWIEGIRTIDNVLAGYCK 292

Query: 243 GKVTCFISDPQSTLDV-------------------------------------------- 258
           GK+TC ++DP+  LD                                             
Sbjct: 293 GKLTCLLADPECILDAIPGDMVVNCMIVAMVAHANQPCEIIYQVGSSLKNPLKLLDLHDF 352

Query: 259 -----SANPWISKDGSPVKIQRGTILSSMARFRMYMAIRFQLPLQALKLANTMVFKKYED 313
                  NPWI+KDG  VK+ +  + S+   F  Y+A+R+ LPL+ L+  N ++ +    
Sbjct: 353 FFKYFHENPWINKDGKAVKVSKLILFSTTFVFHGYLAVRYMLPLKVLQFLNFLLCQILCG 412

Query: 314 TYASLNRKINLVMRLVDLYKPYVFFQGMY 342
                NRKI ++M LV+LYKPY+FF+G++
Sbjct: 413 MCTDHNRKIKMLMYLVELYKPYLFFKGIF 441


>GSVIVT01033433001 assembled CDS
          Length = 632

 Score =  223 bits (567), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 200/400 (50%), Gaps = 69/400 (17%)

Query: 3   SANERFHDEVLGKDLFKVLREKYGANLNSFVSEKLIPVAGDISCEDLGVKDSYLRDEMFK 62
           +A ER  +E++  ++F  L++ YG +  +F+  KL+PVAGD+    LG++  +  + + K
Sbjct: 193 AAMERLKNEIINAEVFDCLQQAYGKSYQAFMLSKLVPVAGDVCGSSLGLEKDFA-EAIAK 251

Query: 63  EIDLVINFAATTNFDERYDIALGINTLGALHVLNFAKKCLKAKMLVHVSTAYVCGEDSGI 122
           E+D+++N AA T FDERYDIA+ INT G  H++NFAK C K K+ + VSTAYV G+  G 
Sbjct: 252 EVDVIVNSAANTTFDERYDIAIDINTKGPCHLMNFAKNCKKLKLFLQVSTAYVNGQRQGR 311

Query: 123 ILEKPFTMGRPKKGTSXXXXXXXXXXXXXXXXXXXXXNASEKE------ITAFMKDFGIE 176
           I+EKPF +G      S                         KE      +   MK+ G+E
Sbjct: 312 IMEKPFCIGDSIARESNISEAPPRLLPTLNIEAEIKLALDSKEAFKGSTLAQKMKELGLE 371

Query: 177 RARAFGWPNTYVFTKAIGEMLLMHFKKNMPLLIIRPTMITSTYKEPFPGWIEGVRTIDSV 236
           RA+  GW +TYVFTKA+GEM++   +  +P++IIRP++I ST +EPFPGW+EG R +D +
Sbjct: 372 RAKKHGWQDTYVFTKAMGEMVIDQMRGEIPVVIIRPSVIESTCREPFPGWMEGNRMMDPI 431

Query: 237 IAGYAKGKVTCFISDPQSTLDV-------------------------------------- 258
           +  Y KG++T F++DP   LDV                                      
Sbjct: 432 VLYYGKGQLTGFVADPNGVLDVVPADMVVNATLAAMARHGGSGKAETNIYQIASSVVNPL 491

Query: 259 -------------SANPWISKDGSPVKIQRGTILSSMARFRMYM---AIRFQLPLQALKL 302
                         ++P +   G+P+ +    + SS+  F  ++   AI  +  L A+  
Sbjct: 492 IFQDLTSHFYEHFKSSPCLDNKGNPIHVPIMKLFSSIEDFSSHLWRDAI-LRSGLSAMPS 550

Query: 303 ANTMVFKKYEDTYASLNRKINLVMRLVDLYKPYVFFQGMY 342
               + +K E T       +     L D+Y+PY F+ G +
Sbjct: 551 QTGKLLRKLEKT-------VKQAKYLADIYQPYTFYGGRF 583


>GSVIVT01013560001 assembled CDS
          Length = 571

 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 170/314 (54%), Gaps = 47/314 (14%)

Query: 3   SANERFHDEVLGKDLFKVLREKYGANLNSFVSEKLIPVAGDISCEDLGVKDSYLRDEMFK 62
           +A +R   E++  +LF+ L++++G     F+  KL PV G++   DLG+ D+ L  E+ +
Sbjct: 137 AAVDRLKTEIINSELFECLKQRHGKYYQDFMLSKLAPVVGNLCESDLGI-DANLISEIAE 195

Query: 63  EIDLVINFAATTNFDERYDIALGINTLGALHVLNFAKK-CLKAKMLVHVSTAYVCGEDSG 121
           E+D++IN AA TNF+ERYD++L  NT+G   +++FAKK C   ++ +HVSTAYV GE  G
Sbjct: 196 EVDVIINSAANTNFEERYDVSLHANTIGPCRLMDFAKKYCKNLRVFLHVSTAYVNGEREG 255

Query: 122 IILEKPFTMG----RPKKGTS------XXXXXXXXXXXXXXXXXXXXXNASEKEITAFMK 171
           +I EKPF MG    R K  +                            N  +++    MK
Sbjct: 256 MITEKPFYMGESIAREKVASEFLPLSYPALDVDDEIKIALDSKVAFEGNLEDQK----MK 311

Query: 172 DFGIERARAFGWPNTYVFTKAIGEMLLMHFKKNMPLLIIRPTMITSTYKEPFPGWIEGVR 231
           + G+ERAR  GW N Y FTKA+GEM++   + ++PL+IIRPT I ST ++PFPGWI+G R
Sbjct: 312 ELGLERARIHGWHNPYEFTKAMGEMMINSMRGDIPLVIIRPTAIESTLEDPFPGWIQGNR 371

Query: 232 ---------------------TIDSVIAGYAKGKVTCFISDPQSTLDVSANPWISKDGSP 270
                                 +D +I  Y KG +  F+ +P+  +D+           P
Sbjct: 372 YLISLPFSCPCTKSHIFSYNQMLDPMILSYGKGNLPSFLVNPEVVIDM----------IP 421

Query: 271 VKIQRGTILSSMAR 284
           V +    I+++MA+
Sbjct: 422 VDMVVNAIIAAMAK 435


>GSVIVT01013561001 assembled CDS
          Length = 311

 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/244 (39%), Positives = 141/244 (57%), Gaps = 14/244 (5%)

Query: 3   SANERFHDEVLGKDLFKVLREKYGANLNSFVSEKLIPVAGDISCEDLGVKDSYLRDEMFK 62
           +A +R   E++  +LF+ L++++G     F+  KL PV G++   DLG+ D+    E+ +
Sbjct: 52  AAMDRLKTEIIDSELFECLKQRHGKYYQDFILSKLAPVVGNLCESDLGI-DANSISEIAE 110

Query: 63  EIDLVINFAATTNFDERYDIALGINTLGALHVLNFAKK-CLKAKMLVHVSTAYVCGEDSG 121
           E+D++IN AA TNF+ERYD++L  N LG   +++F  K C   ++ +HVSTAYV GE  G
Sbjct: 111 EVDVIINSAANTNFEERYDVSLSTNVLGPRRLMDFTNKYCKNLRVFLHVSTAYVSGEREG 170

Query: 122 IILEKPFTMG----RPKKGTSXXXXXXXXXXXXXXXXXXXXXNAS-----EKEITAFMKD 172
           +I+EKPF MG    R K  +                        +     E E    MK 
Sbjct: 171 MIMEKPFHMGERIAREKAASEFPPLAYPVLDVDGEIEIALDSKVAFEGNLEDEK---MKA 227

Query: 173 FGIERARAFGWPNTYVFTKAIGEMLLMHFKKNMPLLIIRPTMITSTYKEPFPGWIEGVRT 232
            G+ERAR  GW N Y FTKA+GEML+   + ++PL+IIRPT I ST  +PFPGWI+G R 
Sbjct: 228 LGLERARIHGWHNPYEFTKAMGEMLINSMRGDIPLVIIRPTAIGSTLDDPFPGWIQGNRY 287

Query: 233 IDSV 236
           + S+
Sbjct: 288 LISL 291


>GSVIVT01030325001 assembled CDS
          Length = 157

 Score = 90.9 bits (224), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 52/66 (78%)

Query: 166 ITAFMKDFGIERARAFGWPNTYVFTKAIGEMLLMHFKKNMPLLIIRPTMITSTYKEPFPG 225
           +   MK+ G+ERAR +GW +TYVFTKA+GEML+ + +  +P++IIRP+ I ST +EPFPG
Sbjct: 74  VAQKMKELGLERARIYGWQDTYVFTKAMGEMLINNMRGEIPVVIIRPSFIESTCREPFPG 133

Query: 226 WIEGVR 231
           W+EG R
Sbjct: 134 WMEGNR 139


>GSVIVT01001346001 assembled CDS
          Length = 104

 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 16  DLFKVLREKYGANLNSFVSEKLIPVAGDISCEDLGVKDSYLRDEMFKEIDLVINFAATTN 75
           +LFK L + +G +   F+  KL+ V GD+   +LG+ D+    E+ K +D+++N AA T 
Sbjct: 7   ELFKCLEQMHGESYTDFMMSKLVSVIGDVCKSNLGM-DATSATEIAKAVDVIVNSAANTI 65

Query: 76  FDERYDIALGINTLGALHVLNFAKKCLKAKMLVHVSTA 113
            DERYD+AL  NT G   +++FAKK  K  + VHVST 
Sbjct: 66  LDERYDVALNTNTKGPSRLVSFAKKYKKPSLSVHVSTG 103