Jatropha Genome Database

JcCB0136181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0136181.20 - phase: 0 /pseudo/partial
         (213 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010308001 assembled CDS                                       130   5e-31
GSVIVT01038631001 assembled CDS                                        59   2e-09

>GSVIVT01010308001 assembled CDS
          Length = 182

 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 74/119 (62%), Gaps = 11/119 (9%)

Query: 34  AAENRDNLDHLXXXXXXXXXXXXXXXXRTAPVAPVGLWDRFPTARTVQQXXXXXXXXXXD 93
           A E RDNLDHL                R   VAP+GLWDRFPTARTVQQ          D
Sbjct: 2   ATEGRDNLDHLRRAGKHNPQKK-----RAPQVAPIGLWDRFPTARTVQQMMETMERMMED 56

Query: 94  PFAYTGTWPSEPPSPVERSGYSRGRTPWEIKEGETEYKMRFDMPGMTKEDVKVWVKRRC 152
           P AY+G WPSE        GYSRGRTPWEIKE E EYK+RFDMPGMTK+DVK+WV+ + 
Sbjct: 57  PLAYSGGWPSE------SGGYSRGRTPWEIKEDEGEYKIRFDMPGMTKDDVKLWVEEKM 109


>GSVIVT01038631001 assembled CDS
          Length = 227

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 14/85 (16%)

Query: 65  VAPVGLWDRFPTARTVQQXXXXXXXXXXDPFAYTGTWPSEPPSPVERSGYSRGRTPWEIK 124
           ++P GL D F   RT++Q          +  A+ G+              +  R+PW+I 
Sbjct: 86  ISPFGLLDPFSPMRTMRQMMDAMDRMFEETVAFPGS--------------AEVRSPWDIV 131

Query: 125 EGETEYKMRFDMPGMTKEDVKVWVK 149
           + E E KMRFDMPG++KEDVKV V+
Sbjct: 132 DDENEIKMRFDMPGLSKEDVKVSVE 156