Jatropha Genome Database

JcCB0135871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0135871.10 - phase: 2 /TE/partial
         (298 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009548001 assembled CDS                                       184   5e-47
GSVIVT01000641001 assembled CDS                                       127   6e-30
GSVIVT01031724001 assembled CDS                                        95   4e-20
GSVIVT01013655001 assembled CDS                                        81   5e-16
GSVIVT01012382001 assembled CDS                                        76   1e-14
GSVIVT01031819001 assembled CDS                                        69   2e-12
GSVIVT01013341001 assembled CDS                                        62   4e-10

>GSVIVT01009548001 assembled CDS
          Length = 849

 Score =  184 bits (467), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 113/169 (66%)

Query: 40  FRMEKCSARIVPI*KGDRFSEMQCPQNDLERKEMESIPYASIAGSLMYVQTCTRPDISFT 99
           F M  C    V + KGD+     CP+NDLE+  M++IPYAS  GSLMY Q C RP+I F 
Sbjct: 558 FNMHTCKDGDVLVVKGDKLGNEHCPKNDLEKDAMKAIPYASAIGSLMYAQACIRPNIVFI 617

Query: 100 VGMLRRYQSNFGMDHWKAAKKILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRK 159
           V +L RY SN G  HW AAKK++RYLQ T D +L YR+  +LEVVGYS+S++  C D  K
Sbjct: 618 VNVLGRYLSNLGQYHWVAAKKVMRYLQRTNDFMLVYRRVDNLEVVGYSNSDFNGCSDDCK 677

Query: 160 STFGYLFFLAKRAVSWKSRKQSVIATSTIEAEFVACFEATVHALRCKTL 208
           ST GY+F L   A+SWKS KQS+IA ST+ A+FVAC+ A+   +  + L
Sbjct: 678 STSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACYGASSQVVWLRKL 726


>GSVIVT01000641001 assembled CDS
          Length = 947

 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/141 (49%), Positives = 94/141 (66%), Gaps = 4/141 (2%)

Query: 71  KEMESIPYASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAKKILRYLQGTKD 130
           K+++SI Y  I GSLMY+ T TRPDI  +V ++ RY  N    H+ AAKKI RYLQGTKD
Sbjct: 229 KKVDSIIYKQIVGSLMYL-TATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKD 287

Query: 131 HILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWKSRKQSVIATSTIEA 190
             L Y+K    +++G++DS+YA   D+R+ST GY+F L   AVSW S+KQ ++  ST EA
Sbjct: 288 FGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEA 347

Query: 191 EFVACFEATVHALRCKTLSQV 211
           EFVA   ATV A +   L ++
Sbjct: 348 EFVA---ATVCACQAIWLRKI 365


>GSVIVT01031724001 assembled CDS
          Length = 1135

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 81/131 (61%), Gaps = 1/131 (0%)

Query: 78   YASIAGSLMYVQTCTRPDISFTVGMLRRYQSNFGMDHWKAAKKILRYLQGTKDHILTYRK 137
            Y S+ G+L Y  T TRPDI++T+    ++       H +A K++LRYL+G+  + L+++ 
Sbjct: 990  YRSLVGALQYC-TITRPDIAYTINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQP 1048

Query: 138  STHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAVSWKSRKQSVIATSTIEAEFVACFE 197
            S+ L+++ Y+D++ ASC D R+ST GY  F     +SW + KQ V++ S+IE+++     
Sbjct: 1049 SSSLDLIAYTDADGASCPDDRRSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLAN 1108

Query: 198  ATVHALRCKTL 208
            AT+     ++L
Sbjct: 1109 ATIELTWIQSL 1119


>GSVIVT01013655001 assembled CDS
          Length = 4396

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 3/115 (2%)

Query: 99   TVGMLRRYQSNFGMDHWKAAKKILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSR 158
            T+  L ++      DHW A K++LRYL GT DH +T R+++ L +  +SDS++A   D  
Sbjct: 4254 TMNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDF 4313

Query: 159  KSTFGYLFFLAKRAVSWKSRKQSVIATSTIEAEF--VACFEATVHALRCKTLSQV 211
             ST  Y+ +L    +SW S+KQ  +A S+ EAE+  VA   A +  + C  L+++
Sbjct: 4314 TSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWI-CSLLTEL 4367


>GSVIVT01012382001 assembled CDS
          Length = 952

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 63/109 (57%)

Query: 100 VGMLRRYQSNFGMDHWKAAKKILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRK 159
           V ++ +Y     + H    K+ILRYL+ T    +  R++ H +++G+SDS++A     R+
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRR 810

Query: 160 STFGYLFFLAKRAVSWKSRKQSVIATSTIEAEFVACFEATVHALRCKTL 208
           ST GY  F+    VSWKS+KQ V+A S+ EAE+ A   A+   +  K L
Sbjct: 811 STTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNL 859


>GSVIVT01031819001 assembled CDS
          Length = 149

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 55/81 (67%), Gaps = 1/81 (1%)

Query: 114 HWKAAKKILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAV 173
           H++A K +LRYLQGT  +   +R+   L++ GY D ++++ +D+ KST GY+F L   A+
Sbjct: 68  HYEAVKWMLRYLQGTTKNCPCFRRG-ELKLQGYVDIDFSNEIDNWKSTIGYVFTLGTTAI 126

Query: 174 SWKSRKQSVIATSTIEAEFVA 194
           SW S+ Q ++  STI+ ++VA
Sbjct: 127 SWISQLQKIVVLSTIKVKYVA 147


>GSVIVT01013341001 assembled CDS
          Length = 503

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 49/79 (62%)

Query: 114 HWKAAKKILRYLQGTKDHILTYRKSTHLEVVGYSDSNYASCVDSRKSTFGYLFFLAKRAV 173
           H     KIL+YL+GT    L + K    ++  ++D+++A  ++ R+ST GY  F+    +
Sbjct: 8   HMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCTFVFGNLI 67

Query: 174 SWKSRKQSVIATSTIEAEF 192
           +W+S+KQ+V+A S+ E +F
Sbjct: 68  TWRSKKQNVVARSSAEVKF 86