Jatropha Genome Database

JcCB0135511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0135511.10 - phase: 2 /partial
         (247 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025739001 assembled CDS                                       325   1e-89
GSVIVT01034190001 assembled CDS                                       204   2e-53

>GSVIVT01025739001 assembled CDS
          Length = 349

 Score =  325 bits (832), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/247 (68%), Positives = 185/247 (74%), Gaps = 6/247 (2%)

Query: 2   HQDDVDKNPATIAAVSRGG-TRSWGNXXXXXXXXXXXXXXXXXXXXXEQAMATPASDSTF 60
           HQ+D +KNPAT   VS+GG TRSWG                      E A+ATPAS++TF
Sbjct: 7   HQEDGEKNPAT---VSKGGATRSWGTTVSGQSVSTSGSVGSPSSRS-EAALATPASENTF 62

Query: 61  LRLNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRGLRQFSMKVCEKVESKGTTTYN 120
           LRLNHL                             SGRGLRQFSMKVCEKVESKG TTYN
Sbjct: 63  LRLNHLDIHGDDAGSQGAANRKKKRGQRAVGGDK-SGRGLRQFSMKVCEKVESKGRTTYN 121

Query: 121 EVADELVAEFADPSNSVSSPDQQQYDEKNIRRRVYDALNVLMALDIISKDKKEIQWKGLP 180
           EVADELVAEFADPSNS++SPDQQQYDEKNIRRRVYDALNVLMA+DIISKDKKEIQWKGLP
Sbjct: 122 EVADELVAEFADPSNSLTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLP 181

Query: 181 RTSLSDIEELKAERLALRNRIEKKSAYLQELEEQYVGLQNLINRNEQLYSSGNAPSGGVS 240
           RTSL+DIEELK +R+ LR RIEKK+AYLQELEEQ+VGLQNLI RNEQLYSSGNAPSGGV+
Sbjct: 182 RTSLNDIEELKTDRIGLRGRIEKKAAYLQELEEQFVGLQNLIQRNEQLYSSGNAPSGGVA 241

Query: 241 LPFILVQ 247
           LPFILVQ
Sbjct: 242 LPFILVQ 248


>GSVIVT01034190001 assembled CDS
          Length = 378

 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/151 (66%), Positives = 124/151 (82%), Gaps = 1/151 (0%)

Query: 97  GRGLRQFSMKVCEKVESKGTTTYNEVADELVAEFADPSNSVSSPDQQQYDEKNIRRRVYD 156
           G GLRQFS+ VC+KVE+K TTTY+EVADE++AEFA  ++S ++    ++DEKNIRRRVYD
Sbjct: 146 GGGLRQFSIIVCKKVENKRTTTYSEVADEIIAEFA-AAHSKTAVSLDEFDEKNIRRRVYD 204

Query: 157 ALNVLMALDIISKDKKEIQWKGLPRTSLSDIEELKAERLALRNRIEKKSAYLQELEEQYV 216
           ALNVLMALDII++DKKEI+WKGLP     DIEE+KA R+ L  R+EKK+AYL++LE+Q V
Sbjct: 205 ALNVLMALDIITRDKKEIRWKGLPTADWKDIEEVKALRVKLMTRMEKKTAYLKDLEDQIV 264

Query: 217 GLQNLINRNEQLYSSGNAPSGGVSLPFILVQ 247
           GLQNL+ RN+QL  SGN PS G  LPFILVQ
Sbjct: 265 GLQNLMLRNQQLLKSGNVPSEGFPLPFILVQ 295