Jatropha Genome Database
- JcCB0135201.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0135201.20 - phase: 2 /partial
(58 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01026969001 assembled CDS 112 3e-26
GSVIVT01008553001 assembled CDS 80 2e-16
GSVIVT01033063001 assembled CDS 78 7e-16
GSVIVT01010525001 assembled CDS 74 2e-14
GSVIVT01020864001 assembled CDS 62 4e-11
GSVIVT01028147001 assembled CDS 61 1e-10
GSVIVT01034968001 assembled CDS 59 4e-10
GSVIVT01022245001 assembled CDS 57 1e-09
GSVIVT01033195001 assembled CDS 57 2e-09
GSVIVT01018300001 assembled CDS 57 2e-09
GSVIVT01022259001 assembled CDS 57 2e-09
GSVIVT01020060001 assembled CDS 56 3e-09
GSVIVT01012196001 assembled CDS 56 4e-09
GSVIVT01021397001 assembled CDS 56 4e-09
GSVIVT01030453001 assembled CDS 56 4e-09
GSVIVT01033194001 assembled CDS 55 6e-09
GSVIVT01008046001 assembled CDS 55 6e-09
GSVIVT01012682001 assembled CDS 55 6e-09
GSVIVT01011356001 assembled CDS 55 7e-09
GSVIVT01035426001 assembled CDS 54 2e-08
GSVIVT01011472001 assembled CDS 53 2e-08
GSVIVT01028244001 assembled CDS 53 2e-08
GSVIVT01037686001 assembled CDS 53 3e-08
GSVIVT01025562001 assembled CDS 53 4e-08
GSVIVT01029688001 assembled CDS 52 5e-08
GSVIVT01014854001 assembled CDS 51 9e-08
GSVIVT01001332001 assembled CDS 51 1e-07
GSVIVT01007006001 assembled CDS 50 2e-07
GSVIVT01037775001 assembled CDS 50 2e-07
GSVIVT01030046001 assembled CDS 50 3e-07
GSVIVT01030258001 assembled CDS 49 5e-07
GSVIVT01024624001 assembled CDS 49 6e-07
GSVIVT01034148001 assembled CDS 47 1e-06
GSVIVT01035884001 assembled CDS 47 2e-06
GSVIVT01035965001 assembled CDS 46 4e-06
GSVIVT01015952001 assembled CDS 45 5e-06
>GSVIVT01026969001 assembled CDS
Length = 201
Score = 112 bits (280), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/58 (82%), Positives = 56/58 (96%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNHPCEKVMETLSPLLRELQFLSRI 58
SYYRCT HTC+VKKQ+QRLSKD+S+VVTTYEGIHNHPCEK+METLSPLL+++QFLSR
Sbjct: 144 SYYRCTHHTCDVKKQVQRLSKDTSVVVTTYEGIHNHPCEKLMETLSPLLKQIQFLSRF 201
>GSVIVT01008553001 assembled CDS
Length = 151
Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 40/53 (75%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNHPCEKVMETLSPLLRELQ 53
SYYRCT CNVKKQ+QRLSKD IVVTTYEGIH HP EK E +LR++Q
Sbjct: 93 SYYRCTYKDCNVKKQVQRLSKDEEIVVTTYEGIHTHPVEKPTENFEHILRQMQ 145
>GSVIVT01033063001 assembled CDS
Length = 182
Score = 78.2 bits (191), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNHPCEKVMETLSPLLRELQFLS 56
SYYRCT CNVKKQ+QRLSKD SIVVTTYEG+H HP EK + +L ++Q +
Sbjct: 126 SYYRCTHQGCNVKKQVQRLSKDESIVVTTYEGVHTHPIEKPTDNFEHILNQMQIYA 181
>GSVIVT01010525001 assembled CDS
Length = 189
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNHPCEKVMETLSPLLRELQ 53
SYYRCT CNVKKQ+QRLSKD IVVTTYEG+H+H EK + +L ++Q
Sbjct: 132 SYYRCTHQGCNVKKQVQRLSKDEGIVVTTYEGMHSHQIEKSTDNFEHILSQMQ 184
>GSVIVT01020864001 assembled CDS
Length = 311
Score = 62.4 bits (150), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNHPCEKVMETLSPLLRELQFLS 56
SYYRCT C VKK+++R +D SIV+TTYEG HNHPC + + + F S
Sbjct: 194 SYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHPCPATIRGNAAAMLPTSFFS 249
>GSVIVT01028147001 assembled CDS
Length = 302
Score = 60.8 bits (146), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/37 (67%), Positives = 30/37 (81%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 37
SYYRCT +CNVKK+++R KD +IVVTTYEG H HP
Sbjct: 170 SYYRCTSASCNVKKRVERCFKDPAIVVTTYEGQHTHP 206
>GSVIVT01034968001 assembled CDS
Length = 309
Score = 58.9 bits (141), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNHPC 38
SYYRCT C VKK+++R S D + VVTTYEG H HPC
Sbjct: 176 SYYRCTTAACGVKKRVERSSDDPTTVVTTYEGQHTHPC 213
>GSVIVT01022245001 assembled CDS
Length = 193
Score = 57.4 bits (137), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 31/40 (77%), Gaps = 2/40 (5%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH--PC 38
+YY+C CNVKK+++R +DSS V+TTYEG+HNH PC
Sbjct: 127 NYYKCASGGCNVKKRVERDREDSSYVITTYEGVHNHESPC 166
>GSVIVT01033195001 assembled CDS
Length = 101
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNHPCEKVMETL 45
+YYRC+ C VKK+++R DSS V+TTYEG+HNHP + TL
Sbjct: 40 NYYRCSSRGCQVKKRVERDRDDSSYVITTYEGVHNHPTPRNHITL 84
>GSVIVT01018300001 assembled CDS
Length = 228
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH-PCE 39
SYYRCT C VKK+++RLS+D +V+TTYEG HNH PC+
Sbjct: 176 SYYRCTHTNCRVKKRVERLSEDCRMVITTYEGRHNHSPCD 215
>GSVIVT01022259001 assembled CDS
Length = 226
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH-PCEKVMETLSP 47
SYYRCTQ C VKK+++RL++D +V+TTYEG H H P + E+ +P
Sbjct: 171 SYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHSPSHDLEESQAP 218
>GSVIVT01020060001 assembled CDS
Length = 594
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
Query: 1 SYYRCT-QHTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 37
+YYRCT +C V+KQ+QR ++D+SI++TTYEG HNHP
Sbjct: 266 AYYRCTVSPSCPVRKQVQRCAEDTSILITTYEGTHNHP 303
>GSVIVT01012196001 assembled CDS
Length = 283
Score = 55.8 bits (133), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYYRCT C VKK+++R S+D SIV+TTYEG H H
Sbjct: 161 SYYRCTNSKCTVKKRVERSSEDPSIVITTYEGQHCH 196
>GSVIVT01021397001 assembled CDS
Length = 319
Score = 55.8 bits (133), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYYRCT C VKK+++R +D S V+TTYEG HNH
Sbjct: 202 SYYRCTTQKCTVKKRVERSFQDPSTVITTYEGQHNH 237
>GSVIVT01030453001 assembled CDS
Length = 498
Score = 55.8 bits (133), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 1 SYYRCTQHT-CNVKKQIQRLSKDSSIVVTTYEGIHNHP 37
+YYRCT C V+KQ+QR ++D SI++TTYEG HNHP
Sbjct: 331 AYYRCTMAAGCPVRKQVQRCAEDRSILITTYEGNHNHP 368
>GSVIVT01033194001 assembled CDS
Length = 156
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNHPCEKV 41
+YYRC+ C VKK+I+R +DSS V+TTY GIHNHP V
Sbjct: 89 NYYRCSSGDCQVKKRIERDIEDSSYVITTYTGIHNHPIPGV 129
>GSVIVT01008046001 assembled CDS
Length = 605
Score = 55.1 bits (131), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Query: 1 SYYRCT-QHTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 37
+YYRCT +C V+KQ+QR ++D SI++TTYEG HNHP
Sbjct: 279 AYYRCTVAPSCPVRKQVQRFAEDMSILITTYEGTHNHP 316
>GSVIVT01012682001 assembled CDS
Length = 510
Score = 55.1 bits (131), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 1 SYYRCTQHT-CNVKKQIQRLSKDSSIVVTTYEGIHNHP 37
+YYRCT C V+KQ+QR ++D SI++TTYEG HNHP
Sbjct: 297 AYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGTHNHP 334
>GSVIVT01011356001 assembled CDS
Length = 502
Score = 55.1 bits (131), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Query: 1 SYYRCT-QHTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 37
+YYRCT +C V+KQ+QR ++D SI++TTYEG HNHP
Sbjct: 193 AYYRCTVAPSCPVRKQVQRCAEDMSILITTYEGTHNHP 230
>GSVIVT01035426001 assembled CDS
Length = 166
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
+YYRC+ CNVKK+++R +D V+TTYEGIHNH
Sbjct: 125 NYYRCSVDGCNVKKRVERDREDPKYVITTYEGIHNH 160
>GSVIVT01011472001 assembled CDS
Length = 889
Score = 53.1 bits (126), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYY+CT CNV+K ++R S D V+TTYEG HNH
Sbjct: 796 SYYKCTSLGCNVRKHVERASTDPKAVITTYEGKHNH 831
>GSVIVT01028244001 assembled CDS
Length = 479
Score = 53.1 bits (126), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 1 SYYRCTQHT-CNVKKQIQRLSKDSSIVVTTYEGIHNHP 37
+YYRCT C V+KQ+QR ++D +I++TTYEG HNHP
Sbjct: 256 AYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHP 293
>GSVIVT01037686001 assembled CDS
Length = 496
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Query: 1 SYYRCTQHT-CNVKKQIQRLSKDSSIVVTTYEGIHNHP 37
+YYRCT T C V+KQ+QR ++D ++++TTYEG HNHP
Sbjct: 265 AYYRCTMATACPVRKQVQRSAEDRTVLITTYEGHHNHP 302
>GSVIVT01025562001 assembled CDS
Length = 438
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYYRCT CNV+K ++R S+D +TTYEG HNH
Sbjct: 378 SYYRCTSLKCNVRKHVERASEDPGSFITTYEGKHNH 413
>GSVIVT01029688001 assembled CDS
Length = 490
Score = 52.0 bits (123), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 1 SYYRCT-QHTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 37
+YYRCT C V+KQ+QR +D SI++TTYEG HNHP
Sbjct: 253 AYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHP 290
>GSVIVT01014854001 assembled CDS
Length = 622
Score = 51.2 bits (121), Expect = 9e-08, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYY+CT C V+K ++R S D V+TTYEG HNH
Sbjct: 461 SYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNH 496
>GSVIVT01001332001 assembled CDS
Length = 435
Score = 50.8 bits (120), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYY+CT CNV+K ++R + D V+TTYEG HNH
Sbjct: 381 SYYKCTNPGCNVRKHVERAATDPKAVITTYEGKHNH 416
>GSVIVT01007006001 assembled CDS
Length = 550
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYY+CT C V+K ++R S D V+TTYEG HNH
Sbjct: 382 SYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNH 417
>GSVIVT01037775001 assembled CDS
Length = 552
Score = 50.1 bits (118), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYY+CT C V+K ++R S D V+TTYEG HNH
Sbjct: 389 SYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNH 424
>GSVIVT01030046001 assembled CDS
Length = 364
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYYRC+ C VKK ++R S D +V+TTYEG H+H
Sbjct: 263 SYYRCSNAGCPVKKHVERASHDPKMVITTYEGQHDH 298
>GSVIVT01030258001 assembled CDS
Length = 513
Score = 48.5 bits (114), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYY+CT C V+K ++R SKD V+TTYEG HNH
Sbjct: 375 SYYKCTSIGCPVRKHVERSSKDIRAVLTTYEGKHNH 410
>GSVIVT01024624001 assembled CDS
Length = 570
Score = 48.5 bits (114), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYY+CT C V+K ++R S D V+TTYEG HNH
Sbjct: 454 SYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNH 489
>GSVIVT01034148001 assembled CDS
Length = 299
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYYRCT C+ KKQ+++ S+D ++ TYEG+H H
Sbjct: 133 SYYRCTNPRCSAKKQVEKSSEDPDTLIITYEGLHLH 168
>GSVIVT01035884001 assembled CDS
Length = 262
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 1 SYYRCTQH-TCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
+Y+RC+ C VKK++QR +DSSI+V TYEG HNH
Sbjct: 118 AYFRCSMAPQCPVKKKVQRCMEDSSILVATYEGAHNH 154
>GSVIVT01035965001 assembled CDS
Length = 530
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 1 SYYRCTQHTCNVKKQIQRLSKDSSIVVTTYEGIHNH 36
SYYRCT C V+K ++R + D + ++ TYEG H+H
Sbjct: 370 SYYRCTSAGCPVRKHVERDTDDKTTIIVTYEGKHDH 405
>GSVIVT01015952001 assembled CDS
Length = 278
Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 1 SYYRCT-QHTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 37
+Y++C+ +C VKK++QR +D SI+V TYEG HNHP
Sbjct: 181 AYFKCSFAPSCPVKKKVQRSVEDQSILVATYEGEHNHP 218