Jatropha Genome Database

JcCB0135201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0135201.10 + phase: 0 /partial
         (141 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019421001 assembled CDS                                       226   4e-60

>GSVIVT01019421001 assembled CDS
          Length = 1521

 Score =  226 bits (575), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/141 (76%), Positives = 118/141 (83%)

Query: 1    TLLSGASETAITTVISALSFSPDGEGLIAFSEHGLMIRWWSLGSMWWEKLNRNLVPVQCT 60
            +LLSGASET +TT ISALSFSPDGEGL+AFSEHGLMIRWWSLGS WWEKL RN VPVQ T
Sbjct: 1381 SLLSGASETTLTTAISALSFSPDGEGLVAFSEHGLMIRWWSLGSAWWEKLGRNFVPVQYT 1440

Query: 61   KLIFVPLWEGFSPNSSRTSIMASISGHDRQTNLQENARSLNYADSLKILIQNLDLSYRLE 120
            KLIFVP WEG SPNSSR+S+MASI GHDRQ N QEN +     D LK+LI N+DLSYRLE
Sbjct: 1441 KLIFVPPWEGMSPNSSRSSVMASILGHDRQANSQENTKGSGDMDCLKVLIHNIDLSYRLE 1500

Query: 121  WVGGRKVLLSRHGMELGTFPL 141
            WVG R+VL+ RHG ELGTF L
Sbjct: 1501 WVGERRVLILRHGRELGTFQL 1521