Jatropha Genome Database

JcCB0134471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0134471.10 + phase: 1 /partial
         (286 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030501001 assembled CDS                                       379   e-105
GSVIVT01003286001 assembled CDS                                       189   2e-48

>GSVIVT01030501001 assembled CDS
          Length = 683

 Score =  379 bits (973), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 171/279 (61%), Positives = 227/279 (81%)

Query: 1   FYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNFQKAITWFLMXXXX 60
           FYDLYKNVPVLKATASRLCGPLFDWIE+WEM+SRI+YLGTMLFLHNFQKA+ WFLM    
Sbjct: 400 FYDLYKNVPVLKATASRLCGPLFDWIESWEMISRIRYLGTMLFLHNFQKAVKWFLMMTRT 459

Query: 61  XXXXXXXXXQPLLEPLMEVLGFLLPMWNVLIEVVENLVSIIWVATDSVFTAVIDLIQIVL 120
                    QP+ EP ME+LGF+LP+WN+ +++VE+  S +W+  DS +  V D++ ++L
Sbjct: 460 TRSFISVLTQPMAEPFMELLGFILPLWNMCVQIVESFGSSVWILIDSSWNLVDDIVIVLL 519

Query: 121 WPMWFIISMVWTIATSVLYPIFWILWEIFYAPIRMVLAIASFIALIGAWISELIGDLWRS 180
            P+WFI+S++W+IATS++YPIFW+LWEI YAPIR+VL  ++FIA I ++I +++G++W+S
Sbjct: 520 SPIWFILSVLWSIATSIIYPIFWVLWEILYAPIRLVLLFSNFIAFICSFICDVLGEIWQS 579

Query: 181 VSCIFRVASATEATISTYEVSMWRSLWNDLFSQVFRALRSILNGFVAFFTACNRHRLSIY 240
           +S + ++ SA+   +ST EVSMWRSLWNDLFSQVFRA+RSILNGFVAFFTACNRHRLSIY
Sbjct: 580 LSGLCQLGSASRTALSTSEVSMWRSLWNDLFSQVFRAVRSILNGFVAFFTACNRHRLSIY 639

Query: 241 NHIQEFIRRIFGQAPRSQPSGYRHNKPTSGRQCLAEVGK 279
           NHIQEFI++++G   RS+PS  RH++ T G +  +E G+
Sbjct: 640 NHIQEFIQKLYGPPQRSRPSDSRHSRRTRGSRNQSETGR 678


>GSVIVT01003286001 assembled CDS
          Length = 538

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 150/248 (60%), Gaps = 3/248 (1%)

Query: 1   FYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNFQKAITWFLMXXXX 60
           FYDLYKNVP+LKATAS L GP+F WIE  EM++RI YLGTMLF+ NF KA+ W LM    
Sbjct: 280 FYDLYKNVPLLKATASHLFGPIFKWIEKSEMITRIFYLGTMLFVQNFGKALEWVLMMMRV 339

Query: 61  XXXXXXXXXQPLLEPLMEVLGFLLPMWNVLIEVVENLVSIIWVATDSVFTAVIDLIQIVL 120
                     P ++PL  ++  +  +WN+L E  E       +  +S+ + V+DL Q+++
Sbjct: 340 ITMPVSITMTPFMDPLEGMVEVISSIWNILAETGEQFFYTAQLMAESLCSMVVDLTQVLI 399

Query: 121 WPMWFIISMVWTIATSVLYPIFWILWEIFYAPIRMVLAIASFIALIGAWISELIGDLWR- 179
            P   + S+V T+ T V   I + +W++   P R  L +A ++A + + IS+ +      
Sbjct: 400 SPFELLYSLVSTLVTLVC-TILYSVWKLLLIPARANLGLAKYVASLFSGISDFLKRTSMV 458

Query: 180 SVSCIFRVASATEATISTYEVSMWRSLWNDLFSQVFRALRSILNGFVAFFTACNRHRLSI 239
           S S + ++    +A  ++ ++S WR LW D+FS+VFR+LRSI+NG + FFT+CNRHRL  
Sbjct: 459 STSSMDQLKYFAQAKPTSSQISFWRPLWQDIFSKVFRSLRSIINGLIGFFTSCNRHRLR- 517

Query: 240 YNHIQEFI 247
           Y H   FI
Sbjct: 518 YIHFISFI 525