Jatropha Genome Database

JcCB0133991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133991.20 - phase: 0 /partial
         (277 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009862001 assembled CDS                                       428   e-120

>GSVIVT01009862001 assembled CDS
          Length = 537

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/262 (77%), Positives = 227/262 (86%), Gaps = 8/262 (3%)

Query: 23  HLLTCGRAWAISLTLWSEMSSEILKPYLPSDGDGT-------LSLHGRGLNRFWSNIEGY 75
           HLLTCGRAWAISL+  S +  EIL+   P DG+G+        SLHG+GLNRFWSNIEGY
Sbjct: 277 HLLTCGRAWAISLSPRSTIGQEILRVCFPRDGEGSEESLLYRSSLHGKGLNRFWSNIEGY 336

Query: 76  HGPLLFLVSATSGNAHEDNTNVRKWIIGALTQQGFENKDMFYGSSGKLYAICPIFHTFSH 135
           HGP+L L+SA+SGN+ E +TN R+WIIGALTQQGFENKDMFYG+SG LYAI P+FH+FS 
Sbjct: 337 HGPMLMLISASSGNS-EGSTNSRRWIIGALTQQGFENKDMFYGNSGNLYAISPVFHSFSP 395

Query: 136 SGKDKNFVYSHLHPTRRAYEPHPKPVGIAFGGTIGNERIFIDEDFARVTVRHHAVDKTYQ 195
           SGK+KNFVYSHLHPT RAYEPHPKP GIAFGGTIGNERIFIDEDFARVTVRHHAVDKTYQ
Sbjct: 396 SGKEKNFVYSHLHPTGRAYEPHPKPAGIAFGGTIGNERIFIDEDFARVTVRHHAVDKTYQ 455

Query: 196 PGSIFPSQGFLPVEALISEVEVWGLGGRTAKEVQASYKKREDLFIEQRRKVDLKTFASWE 255
           PGS+ P QGFLPVEA + +VEVWGLGGRTA+EVQ S++KRE LF EQRRKVDLKTFASW+
Sbjct: 456 PGSLIPDQGFLPVEARVLDVEVWGLGGRTAREVQISFQKREQLFTEQRRKVDLKTFASWD 515

Query: 256 DSPEKMMMDMMSDPNAVRREDR 277
           DSPEKMMMD+MSDPN V REDR
Sbjct: 516 DSPEKMMMDVMSDPNRVNREDR 537