Jatropha Genome Database

JcCB0133671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133671.10 + phase: 0 
         (162 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032936001 assembled CDS                                       177   2e-45
GSVIVT01011178001 assembled CDS                                        97   3e-21
GSVIVT01017244001 assembled CDS                                        89   8e-19
GSVIVT01007719001 assembled CDS                                        49   1e-06

>GSVIVT01032936001 assembled CDS
          Length = 183

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 81/95 (85%), Positives = 91/95 (95%)

Query: 49  AALSPELKSTLDKVVSSQKVVLFMKGTKEFPQCGFSNTVVQILNSFNVPYETINILENEV 108
           +AL+PELK+TLDKVV+S KVVLFMKGTKEFPQCGFSNTVVQILNS NVP+ETINILENE+
Sbjct: 75  SALTPELKTTLDKVVTSNKVVLFMKGTKEFPQCGFSNTVVQILNSLNVPFETINILENEI 134

Query: 109 LRQGLKEYSSWPTFPQLYIDGEFFGGCDITVGKFS 143
           LRQGLKEYS+WPTFPQLYI+GEFFGGCDITV  ++
Sbjct: 135 LRQGLKEYSNWPTFPQLYIEGEFFGGCDITVDAYN 169


>GSVIVT01011178001 assembled CDS
          Length = 297

 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 63/86 (73%), Gaps = 3/86 (3%)

Query: 55  LKSTLDKVVSSQKVVLFMKGTKEFPQCGFSNTVVQILNSFNVPYETINILENEV---LRQ 111
           L++ +D++V   KVV F+KG++  P CGFS  VV IL S  V YE++++L+ E    LR+
Sbjct: 196 LETLIDRLVKENKVVAFIKGSRSAPLCGFSQRVVGILESEGVDYESLDVLDEEHNYGLRE 255

Query: 112 GLKEYSSWPTFPQLYIDGEFFGGCDI 137
            LK+YS+WPTFPQ++++GE  GGCDI
Sbjct: 256 TLKKYSNWPTFPQIFVNGELVGGCDI 281


>GSVIVT01017244001 assembled CDS
          Length = 170

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 57/83 (68%)

Query: 55  LKSTLDKVVSSQKVVLFMKGTKEFPQCGFSNTVVQILNSFNVPYETINILENEVLRQGLK 114
           L+  +++ V    V+++MKG  + P+CGFS+  V++L  +NVP    NILE+  L+  +K
Sbjct: 63  LQDIVEQDVKDNPVMIYMKGVPDVPRCGFSSLAVRVLKEYNVPLSARNILEDPELKIAVK 122

Query: 115 EYSSWPTFPQLYIDGEFFGGCDI 137
           ++S WPTFPQ++I GEF GG DI
Sbjct: 123 KFSHWPTFPQIFIKGEFIGGSDI 145


>GSVIVT01007719001 assembled CDS
          Length = 109

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 61  KVVSSQKVVLFMKGTKEFPQCGFSNTVVQILNSFNVPYETINI---LENEVLRQGLKEYS 117
           ++VSS  VV+F K       CG+   V Q+L+     ++TI +    +   ++  L+E++
Sbjct: 8   EIVSSTPVVVFSK-----TYCGYCKRVKQLLSQLKATHKTIELDQESDGAEIQSALREWT 62

Query: 118 SWPTFPQLYIDGEFFGGCDITVGKFSLDAILIFLVFVNPIWNVA 161
              T P ++I G+  GGCD  + K     ++  L     I  V+
Sbjct: 63  GQSTVPNVFIGGKHMGGCDSVMEKHQEGKLVPLLKEAGAIAEVS 106