Jatropha Genome Database

JcCB0133481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133481.10 - phase: 0 
         (251 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002745001 assembled CDS                                        61   5e-10

>GSVIVT01002745001 assembled CDS
          Length = 437

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 69  RLWNNEDETVLLSAMINLGIKSGD----SNNVDRLYDHVIKDLHCTTVSKSQLTEKVHRL 124
           R+W+ EDE  +L  MI+   K+G     + +++  YD V   LH    S+ QLT+K  RL
Sbjct: 205 RIWSEEDELGILKGMIDYSAKNGSVPYPNGDMNEFYDFVKNTLHG-DFSRVQLTDKARRL 263

Query: 125 RKKYKKNLVRG--GRD-SLSGKHEIELFDLCHQLW 156
           +KKY  N+ R   G D +    HE   F+L  ++W
Sbjct: 264 KKKYSNNVSRAKLGEDPTFQKPHEQRAFELSKKIW 298