Jatropha Genome Database

JcCB0133321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133321.10 - phase: 0 
         (178 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011602001 assembled CDS                                       323   3e-89
GSVIVT01016291001 assembled CDS                                        79   9e-16
GSVIVT01016290001 assembled CDS                                        79   1e-15
GSVIVT01026584001 assembled CDS                                        49   1e-06

>GSVIVT01011602001 assembled CDS
          Length = 273

 Score =  323 bits (827), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 156/191 (81%), Positives = 169/191 (88%), Gaps = 13/191 (6%)

Query: 1   MGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGPPQDSGISLQTVLELGPLVPLFGE 60
           +GELGC+FEVYRNDEL+VEELK+KNPRGVLISPGPG PQDSGISLQTVLELGP+VPLFG 
Sbjct: 83  LGELGCNFEVYRNDELSVEELKKKNPRGVLISPGPGTPQDSGISLQTVLELGPVVPLFGV 142

Query: 61  CMGLQW-------------KIVRSPYGVVHGKSSPVYYDEKGEDGLFSGLENPFTAGRYH 107
           CMGLQ              KIVRSP+GV+HGKSSPVYYDEKGEDGLFSGL NPFTAGRYH
Sbjct: 143 CMGLQCIGEAFGGKTMFSGKIVRSPFGVMHGKSSPVYYDEKGEDGLFSGLSNPFTAGRYH 202

Query: 108 SLVIEKDSFPSEELEITAWTEDGLIMAARHKKYKHLQGVQFHPESIITSEGKSIVRNFVK 167
           SLVIEKD+FP+E LEITAWTEDGLIMAARHKKYKHLQGVQFHPESIITSEG+ IVRNFV+
Sbjct: 203 SLVIEKDTFPNEALEITAWTEDGLIMAARHKKYKHLQGVQFHPESIITSEGRGIVRNFVR 262

Query: 168 MIERKEAESQN 178
           MIER E++  N
Sbjct: 263 MIERSESKYHN 273


>GSVIVT01016291001 assembled CDS
          Length = 853

 Score = 79.3 bits (194), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 94/192 (48%), Gaps = 40/192 (20%)

Query: 10  VYRNDELTVEE----LKRKNP-RGVLISPGPGPPQ---DSGISLQTVLELGPLVPLFGEC 61
           V  ND+L  +E    L  +N    ++ISPGPG P    D GI LQ +LE    +P+ G C
Sbjct: 111 VVHNDDLGWKEVCHYLYEENAFDNIVISPGPGSPACSADIGICLQLLLECRD-IPILGVC 169

Query: 62  MGLQWKIVRSPYGVVHGK-----SSPVY--YDEKGEDG--LF----SGLENPFTAGRYHS 108
           +G Q        G VHG      S P++    E   +G  LF    SG  + F   RYHS
Sbjct: 170 LGHQ------ALGYVHGARVVHASEPIHGRLSEIEHNGCRLFHNIPSGKNSGFKVVRYHS 223

Query: 109 LVIEKDSFPSEELEITAWTEDG----------LIMAARHKKYKHLQGVQFHPESIITSEG 158
           LV++  S P+E + I AWT             ++M   H    H  G+QFHPESI TS G
Sbjct: 224 LVVDAKSLPNELIPI-AWTSSSDLLSYLETQKVLMGIMHSTRPHY-GLQFHPESIGTSFG 281

Query: 159 KSIVRNFVKMIE 170
           + I +NF +M +
Sbjct: 282 RQIFKNFREMTQ 293


>GSVIVT01016290001 assembled CDS
          Length = 827

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 26/183 (14%)

Query: 10  VYRNDELTVEEL-----KRKNPRGVLISPGPGPP---QDSGISLQTVLELGPLVPLFGEC 61
           V  ND+LT EE+     + K    V+ISPGPG P   +D GI L+ + E    +P+ G C
Sbjct: 110 VVYNDDLTWEEVYHYLYEEKAFDNVVISPGPGTPSRPEDIGICLRLLRECKD-IPILGVC 168

Query: 62  MGLQW-------KIVRSPYGVVHGKSSPVYYDEKGE-DGLFSGLENPFTAGRYHSLVIEK 113
           +G +        +IV +P  + HG+ S + ++     D + SG  + F   RYHSLVI+ 
Sbjct: 169 LGYEALGHVHGAEIVHAPEPI-HGRLSELEHNGCSLFDDIPSGPNSGFKVVRYHSLVIDA 227

Query: 114 DSFPSEELEITAWT-----EDG-LIMAARHKKYKHLQGVQFHPESIITSEGKSIVRNFVK 167
            +  S+EL   AWT     ++G ++M   H    H  GVQFHPESI T+ G+ I +NF +
Sbjct: 228 KTL-SQELVPIAWTSSKKIQNGKILMGIMHCTRPHY-GVQFHPESIGTAYGRKIFKNFRE 285

Query: 168 MIE 170
           + +
Sbjct: 286 ITQ 288


>GSVIVT01026584001 assembled CDS
          Length = 426

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 19/159 (11%)

Query: 1   MGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGPPQDSGISLQTVLELGPLVPLFGE 60
           +   GC   V  +     E LK K P GVL S GPG P     +++TV E+   VP+FG 
Sbjct: 255 LASYGCKITVVPSTWPASETLKMK-PDGVLFSNGPGDPSAVPYAVETVKEILGKVPVFGI 313

Query: 61  CMGLQW-------KIVRSPYGVVHGKSSPVYYDEKGEDGLFSGLENPFTAGRYHSLVIEK 113
           CMG Q        K  +  +G  HG + PV     G   +         + + H+  ++ 
Sbjct: 314 CMGHQLLGQALGGKTFKMKFG-HHGGNHPVRNLRSGRVEI---------SAQNHNYAVDP 363

Query: 114 DSFPSEELEITAWTEDGLIMAARHKKYKHLQGVQFHPES 152
            S P E +E+T    +    A       ++  +Q+HPE+
Sbjct: 364 ASLP-EGVEVTHVNLNDGSCAGLAYPALNIMSLQYHPEA 401