Jatropha Genome Database

JcCB0133181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133181.10 - phase: 0 /partial
         (271 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016650001 assembled CDS                                       503   e-143
GSVIVT01021843001 assembled CDS                                       144   6e-35
GSVIVT01020812001 assembled CDS                                        58   4e-09

>GSVIVT01016650001 assembled CDS
          Length = 582

 Score =  503 bits (1295), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 236/265 (89%), Positives = 254/265 (95%)

Query: 1   CILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGEVRLNSRIKKVELNNDGT 60
           CILIALNRFLQEK+GSKMAFLDGNPPERLCMPIVDHIQSLGG+V+LNSRI+K+ELN DGT
Sbjct: 298 CILIALNRFLQEKNGSKMAFLDGNPPERLCMPIVDHIQSLGGQVQLNSRIQKIELNKDGT 357

Query: 61  VRSFLLNTGDVIEADAYVFATPVDILKLLLPDSWKEIPYFNKLEKLVGVPVINVHIWFDR 120
           V+SF+LN G+VI+ DAYV ATPVDILKLLLP  WKEIPYF +L+KLVGVPVINVHIWFDR
Sbjct: 358 VKSFVLNNGNVIKGDAYVIATPVDILKLLLPGDWKEIPYFRRLDKLVGVPVINVHIWFDR 417

Query: 121 KLKNAYDHLLFSRSSLLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDSEIINAT 180
           KLKN YDHLLFSRS LLSVYADMSVTCKEYY+PNQSMLELVFAPAEEW+SRSDSEII AT
Sbjct: 418 KLKNTYDHLLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWVSRSDSEIIEAT 477

Query: 181 MKELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDY 240
           MKELAKLFPDEI+ DQSKAK+LKYHVVKTPRSVYKT+PNCEPCRPLQRSP+EGFYLAGDY
Sbjct: 478 MKELAKLFPDEISEDQSKAKVLKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDY 537

Query: 241 TKQKYLASMEGAVLSGKLCAQAIVQ 265
           TKQKYLASMEGAVLSGKLCAQAIV+
Sbjct: 538 TKQKYLASMEGAVLSGKLCAQAIVK 562


>GSVIVT01021843001 assembled CDS
          Length = 552

 Score =  144 bits (362), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 148/286 (51%), Gaps = 28/286 (9%)

Query: 1   CILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGEVRLNSRIKKVELNNDGT 60
           C+L   + F  +   S +  L G+P   L  PI  +I   GG   L    +KV  +    
Sbjct: 237 CMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIRQYITDKGGRFHLRWGCRKVLYDRSAD 296

Query: 61  VRSFLLNTG-------DVIEADAYVFATPVDILKLLLPDSWKEIPYFNKLEKLVGVPVIN 113
             +++            ++ ADAYV A  V  +K L+P  W++  +F+ + KLVGVPV+ 
Sbjct: 297 GETYVTGLAMSRATNKKIVRADAYVAACDVPGIKRLVPAQWRDWEFFDNIYKLVGVPVVT 356

Query: 114 VHIWFD------------RKLKNA--YDHLLFSRSSLLSVYADMSVTCKE-YYSPNQ-SM 157
           V + ++            R+L+ A   D+LL++  +  S +AD++++  E YY   Q S+
Sbjct: 357 VQLRYNGWVTELQDLERSRQLRKAAGLDNLLYTPDADFSCFADLALSSPEDYYIEGQGSL 416

Query: 158 LELVFAPAEEWISRSDSEIINATMKELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTI 217
           L+ V  P + ++   ++EIIN   K++  LFP          ++    VVK  +S+Y+  
Sbjct: 417 LQCVLTPGDPYMPLPNAEIINRVAKQVLVLFPSS-----QGLEVTWSSVVKIGQSLYREG 471

Query: 218 PNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 263
           P  +P RP Q++PV+ F+LAG YTKQ Y+ SMEGA LSG+  +  I
Sbjct: 472 PGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQTSAYI 517


>GSVIVT01020812001 assembled CDS
          Length = 490

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 35/250 (14%)

Query: 28  RLCMPIVDHIQSLGGEVRLNSRIKKVELNNDGTVRSFLLNTGDVIEADAYVFATPVDILK 87
           R  +P+++ +   G ++ LN R+ K+    +G      +  G    ADA + A P+ +LK
Sbjct: 225 RGYIPVINTLAK-GLDIHLNHRVTKIVRRYNGV--KVTVEDGRSFVADAAIVAVPIGVLK 281

Query: 88  LLLPDSWKEIPYFNKLEKLVGVPVINVHIWFDRKLKNAYDHLLFSRSSLLSVYADMSVTC 147
                    I +  +L +     + ++ +  + K+   +D + +     L V AD S  C
Sbjct: 282 S------SRIKFEPRLPEWKEEAIADIGVGIENKIALHFDKVFWPNVEFLGVVADTSYGC 335

Query: 148 KEYYSPNQSMLE--LVFAPAEEWIS----RSDSEIINATMKELAKLFPD----------E 191
             + + +++     LV+ PA +        SD    N    +L K+ P+           
Sbjct: 336 SYFLNLHKATSHSVLVYMPAGQLAKDIEKMSDEAAANFAFMQLKKILPEASDPIQYLVSR 395

Query: 192 IAADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEG 251
              D++      Y  V  P  +Y+ +          R PV+  + AG+ T   Y  S+ G
Sbjct: 396 WGTDENSLGSYTYDAVGKPHDLYERL----------RVPVDNLFFAGEATSVNYPGSVHG 445

Query: 252 AVLSGKLCAQ 261
           A  +G L A+
Sbjct: 446 AFSTGTLAAE 455