Jatropha Genome Database

JcCB0131991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0131991.10 - phase: 2 /pseudo/partial
         (179 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021402001 assembled CDS                                       236   4e-63

>GSVIVT01021402001 assembled CDS
          Length = 233

 Score =  236 bits (602), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/175 (64%), Positives = 146/175 (83%), Gaps = 7/175 (4%)

Query: 8   SKDESCC--PISTN----IIISLVFIAMVRIFYVIYRSGKPLRPKSPKPMSTLIVLGSGG 61
            K   CC   +++N    ++++++ + + R+ Y++Y+SGKPL   +P+ +STLIVLGSGG
Sbjct: 2   EKGNGCCFSAMTSNPTILVLVTIITVILTRVLYIMYQSGKPLHNTAPQSVSTLIVLGSGG 61

Query: 62  HTAEMINVLSVLQKDWFTPRFYIAAATDNMSLQKARVLEDSLIDTTGDKVV-SAKFMQIY 120
           HTAEM+N+LS+LQKD FTPRFYIAAATDNMSLQKA ++E SL+D TG + + SA+FMQIY
Sbjct: 62  HTAEMLNLLSMLQKDRFTPRFYIAAATDNMSLQKAHLMEKSLVDMTGGEALESAQFMQIY 121

Query: 121 RSREVGQSYITSIGTTLIAVAHALCLMIKIRPQVILCNGPGTCVPLCIIAY*FKV 175
           RSREVGQSYITS+ TT+IA+AHAL +MIKIRPQVILCNGPGTC+PLC+IA+ FKV
Sbjct: 122 RSREVGQSYITSVVTTIIAIAHALWIMIKIRPQVILCNGPGTCLPLCVIAFLFKV 176