Jatropha Genome Database

JcCB0131911.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0131911.20 + phase: 0 /partial
         (187 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001692001 assembled CDS                                       332   5e-92

>GSVIVT01001692001 assembled CDS
          Length = 546

 Score =  332 bits (852), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 155/186 (83%), Positives = 175/186 (94%)

Query: 1   MKSYQLSELSRTEVESLKARPRIDFFSIFSIVTPIVDDVRSRGDAAVKDYTTRFDKVKLE 60
           MKSY+LSELS+ EV SLKARPRIDF SIF++V PIVDDVRSRGDAAVKDYTTRFDKV+L+
Sbjct: 109 MKSYRLSELSQAEVNSLKARPRIDFSSIFNVVHPIVDDVRSRGDAAVKDYTTRFDKVELD 168

Query: 61  KIVEDVSELPDPELDAAVREAFDVAYDNIYAFHLAQKAAEKSVENMQGVRCKRVPRCISS 120
           +++E+V+ELPDPELDA ++EAFDVAYDNI+AFH AQK+AEK VENM+GV+CKRV R I+S
Sbjct: 169 RLIENVAELPDPELDAGIKEAFDVAYDNIFAFHAAQKSAEKIVENMKGVKCKRVARSIAS 228

Query: 121 VGLYVPGGTAVLPSTALMLSVPAQIAGCKTIVIATPPGQDGSICKEVLYCAKKAGVTHIL 180
           VGLYVPGGTAVLPSTALMLSVPAQIAGCKT+V+ATPP QDG ICKEVLYCAKKAGVTHIL
Sbjct: 229 VGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGGICKEVLYCAKKAGVTHIL 288

Query: 181 KAGGAQ 186
           KAGGAQ
Sbjct: 289 KAGGAQ 294