Jatropha Genome Database

JcCB0131911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0131911.10 + phase: 1 /partial
         (198 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021697001 assembled CDS                                        84   5e-17

>GSVIVT01021697001 assembled CDS
          Length = 673

 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 75/132 (56%), Gaps = 6/132 (4%)

Query: 72  KNSSTNSANKSWADIVEEEENQKLLTGKDLSPCFDDTWGYENEYNDENQDSNIIHNQTCP 131
           ++SST+    SWAD+++    +   + +  +  +D  W +  ++NDEN +SNI H     
Sbjct: 541 QDSSTSKNKMSWADMLDYCYQKPSFSFQTPNKWYDG-WSHGEDFNDENLNSNIFHQTPPS 599

Query: 132 KSPVDTITEKLEACDIKDGYNTFNHSVSPR-NPTARRSL----CFNGNQDYNMRKKNRLQ 186
              +D ++ KLEA D+KDGYNT    VS R NPTARRSL              +++NRLQ
Sbjct: 600 VHEIDNVSYKLEAFDLKDGYNTPGSDVSSRNNPTARRSLSNETMSTSGSTIRPKRRNRLQ 659

Query: 187 VFRDITSTLESP 198
           VFRDIT   ESP
Sbjct: 660 VFRDITLHTESP 671