Jatropha Genome Database

JcCB0131141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0131141.10 + phase: 0 /pseudo
         (202 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024109001 assembled CDS                                       233   6e-62

>GSVIVT01024109001 assembled CDS
          Length = 265

 Score =  233 bits (593), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 138/170 (81%)

Query: 1   MAPHGEGSDAAGDTTVVQAEQRPISNILLIIAMQTEAMPVVNKFQLEEDQHAAFPKGVPW 60
           MAPH + SD A +  V +AE+RPI+ I++IIAMQTEA+P+VN+FQL ED  + FP+GVPW
Sbjct: 1   MAPHDDRSDVAEEAMVAEAEKRPIATIVIIIAMQTEALPLVNRFQLTEDLDSVFPRGVPW 60

Query: 61  VWYHGVYNDLNINLVWPGKDPILGVDSVGTVSASLLTYAAIQALQPDLIINXXXXXXXXX 120
           V YHG+Y DL+I+++WPGKD +LGVD+VGTVSASL+TYA+IQALQPDL+IN         
Sbjct: 61  VRYHGIYKDLHISIIWPGKDLVLGVDNVGTVSASLVTYASIQALQPDLVINAGTAGGFKA 120

Query: 121 XXXSIGDVYLASDVAFHDRRIPIPVFDLYGVGLRKAYSTPNLLKELNLKV 170
               +GDV LA+DVAFHDRRIPIPVFD YG+GLRKA S PNLLKELNLK+
Sbjct: 121 KGACVGDVVLATDVAFHDRRIPIPVFDQYGIGLRKACSAPNLLKELNLKI 170