Jatropha Genome Database

JcCB0130751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0130751.20 + phase: 0 /partial
         (155 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011112001 assembled CDS                                       163   3e-41
GSVIVT01011113001 assembled CDS                                       161   1e-40
GSVIVT01011114001 assembled CDS                                       161   1e-40

>GSVIVT01011112001 assembled CDS
          Length = 303

 Score =  163 bits (413), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 97/121 (80%), Gaps = 5/121 (4%)

Query: 39  VDAFTDSAFMGNPAAVCLLEDEKNEKWLQAVATEFNLSETCYLTRITDGETVSSN----- 93
           VDAFTDSAF GNPAAVCLLE+E++E WLQA+A EFN+S+T YLTRIT  E + S+     
Sbjct: 11  VDAFTDSAFKGNPAAVCLLEEERDEDWLQALAMEFNVSQTGYLTRITKPEALDSSTTILT 70

Query: 94  PRFHLRWFTPVAEIRLCGHATLAASHILFSNGWVNSSTIEFVTLSGFLIAKKVTEISNRE 153
           PRF LRWFTPVAE++LCGHATLAA+H+LF++  +  + IEF+TLSG L A+KV + +N +
Sbjct: 71  PRFRLRWFTPVAEVKLCGHATLAAAHLLFTSSLMKGNMIEFITLSGVLTARKVMQGNNSD 130

Query: 154 A 154
           A
Sbjct: 131 A 131


>GSVIVT01011113001 assembled CDS
          Length = 337

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 97/132 (73%), Gaps = 5/132 (3%)

Query: 28  YRYESSLSFYQVDAFTDSAFMGNPAAVCLLEDEKNEKWLQAVATEFNLSETCYLTRITDG 87
           +  +  + F  VDAFTDSAF GNPAAVCLLE+E++E WLQA+A EFN+SETCYL RIT+ 
Sbjct: 34  FMAKKPVKFTVVDAFTDSAFKGNPAAVCLLEEERDEDWLQALAMEFNISETCYLNRITEP 93

Query: 88  ETVSSN-----PRFHLRWFTPVAEIRLCGHATLAASHILFSNGWVNSSTIEFVTLSGFLI 142
           E + S+     PRF LRWFTP  E+ LCGHATLAA+H LF++  +  + IEF+TLSG L 
Sbjct: 94  EALDSSTTILTPRFRLRWFTPTTEVNLCGHATLAAAHFLFTSSLMKGNMIEFITLSGVLT 153

Query: 143 AKKVTEISNREA 154
           A+KV + +  +A
Sbjct: 154 ARKVMQGNKSDA 165


>GSVIVT01011114001 assembled CDS
          Length = 339

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/132 (57%), Positives = 97/132 (73%), Gaps = 5/132 (3%)

Query: 28  YRYESSLSFYQVDAFTDSAFMGNPAAVCLLEDEKNEKWLQAVATEFNLSETCYLTRITDG 87
           +  +  + F  VDAFTDSAF GNPAAVCLLE+E++E WLQA+A EFN SE+CYL RIT+ 
Sbjct: 36  FMAKKPVKFTVVDAFTDSAFKGNPAAVCLLEEERDEDWLQALAMEFNFSESCYLNRITEP 95

Query: 88  ETVSSN-----PRFHLRWFTPVAEIRLCGHATLAASHILFSNGWVNSSTIEFVTLSGFLI 142
           E + S+     PRF LRWFTP  E+ LCGHATLAA+H LF++  VN + IEF+TLSG L 
Sbjct: 96  EALDSSTTILTPRFRLRWFTPTTEVTLCGHATLAAAHFLFTSRLVNGNLIEFITLSGVLT 155

Query: 143 AKKVTEISNREA 154
           A+KV + +  +A
Sbjct: 156 ARKVMQGNKSDA 167