Jatropha Genome Database

JcCB0130751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0130751.10 + phase: 2 /pseudo/partial
         (272 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011112001 assembled CDS                                       314   2e-86
GSVIVT01011113001 assembled CDS                                       310   4e-85
GSVIVT01011114001 assembled CDS                                       295   2e-80

>GSVIVT01011112001 assembled CDS
          Length = 303

 Score =  314 bits (805), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 142/224 (63%), Positives = 185/224 (82%), Gaps = 9/224 (4%)

Query: 57  MTQIKLCAHATLAASHTLFSNNLVNSNIIEFATLSGILTAKKIPETSND--------KSK 108
           + ++KLC HATLAA+H LF+++L+  N+IEF TLSG+LTA+K+ + +N         +++
Sbjct: 81  VAEVKLCGHATLAAAHLLFTSSLMKGNMIEFITLSGVLTARKVMQGNNSDALKYENGEAQ 140

Query: 109 EGFLIELDFPVVPTIEFNSVDLAPISKALNGASIIDIKRTAVSDDLFIVVPSAKVVTELE 168
           E F +ELDFP+VP +E+NS ++A ISKALNGAS+IDIK+T   DDLF+V+PS K V ++E
Sbjct: 141 EHFSVELDFPIVPMVEYNSAEVASISKALNGASVIDIKKTE-KDDLFVVLPSGKTVVDIE 199

Query: 169 PQFDEVLKLPGRGLIVTGVAPSDSGFDFYSRFFCPKMGVNEDPVCGSAHCSIAPYWSKKL 228
           PQFD++ KLPGRGLI+TG+AP +S FDF+SRFFCPK+G+ EDPVCGSAHCS+APYWS+KL
Sbjct: 200 PQFDDIQKLPGRGLIITGLAPPESEFDFFSRFFCPKLGIKEDPVCGSAHCSLAPYWSQKL 259

Query: 229 GKCDFMAYQASARGGILDIHFDEQKQRVLLRGKAVSVMEGCLFV 272
           GKCD +AY AS R GI+DIH DEQ QRVLLRGKAV+VMEGC+ V
Sbjct: 260 GKCDLLAYPASPRSGIVDIHLDEQNQRVLLRGKAVTVMEGCVLV 303


>GSVIVT01011113001 assembled CDS
          Length = 337

 Score =  310 bits (794), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 141/223 (63%), Positives = 182/223 (81%), Gaps = 9/223 (4%)

Query: 58  TQIKLCAHATLAASHTLFSNNLVNSNIIEFATLSGILTAKKIPE--------TSNDKSKE 109
           T++ LC HATLAA+H LF+++L+  N+IEF TLSG+LTA+K+ +          N +++E
Sbjct: 116 TEVNLCGHATLAAAHFLFTSSLMKGNMIEFITLSGVLTARKVMQGNKSDALKYENGEAQE 175

Query: 110 GFLIELDFPVVPTIEFNSVDLAPISKALNGASIIDIKRTAVSDDLFIVVPSAKVVTELEP 169
            F +ELDFP+VP +E+NS ++A ISKALNGAS+IDIK+T   DDLF+V+PS K V ++EP
Sbjct: 176 HFSVELDFPIVPMVEYNSAEVASISKALNGASVIDIKKTE-GDDLFVVLPSGKTVVDIEP 234

Query: 170 QFDEVLKLPGRGLIVTGVAPSDSGFDFYSRFFCPKMGVNEDPVCGSAHCSIAPYWSKKLG 229
           QFD++ KLPGRGLI+TG+AP +S FDF+SRFFCPK+G+ EDPVCGSAHCS+APYWS+KLG
Sbjct: 235 QFDDIQKLPGRGLIITGLAPPESEFDFFSRFFCPKLGIKEDPVCGSAHCSLAPYWSQKLG 294

Query: 230 KCDFMAYQASARGGILDIHFDEQKQRVLLRGKAVSVMEGCLFV 272
           KCD +AY AS R G +DIH DEQ QRVLLRGKAV+VMEGC+ V
Sbjct: 295 KCDLLAYAASPRSGRVDIHLDEQNQRVLLRGKAVTVMEGCVLV 337


>GSVIVT01011114001 assembled CDS
          Length = 339

 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 137/223 (61%), Positives = 176/223 (78%), Gaps = 9/223 (4%)

Query: 58  TQIKLCAHATLAASHTLFSNNLVNSNIIEFATLSGILTAKKIPE--------TSNDKSKE 109
           T++ LC HATLAA+H LF++ LVN N+IEF TLSG+LTA+K+ +          N +++E
Sbjct: 118 TEVTLCGHATLAAAHFLFTSRLVNGNLIEFITLSGVLTARKVMQGNKSDALKYENGEAQE 177

Query: 110 GFLIELDFPVVPTIEFNSVDLAPISKALNGASIIDIKRTAVSDDLFIVVPSAKVVTELEP 169
            F IELDFP+VP +E+NS ++A ISKALNGAS+IDIK+T   DDLF+V+ S K V ++EP
Sbjct: 178 HFSIELDFPIVPMVEYNSAEVASISKALNGASVIDIKKTE-GDDLFVVLSSGKTVVDIEP 236

Query: 170 QFDEVLKLPGRGLIVTGVAPSDSGFDFYSRFFCPKMGVNEDPVCGSAHCSIAPYWSKKLG 229
           QFD++ KLP  GLI+TG+AP +S FDF+SR F PK+G+ EDPV G  HCS+APYWS+KLG
Sbjct: 237 QFDDIQKLPAMGLIITGLAPPESEFDFFSRSFYPKLGIKEDPVGGGVHCSLAPYWSQKLG 296

Query: 230 KCDFMAYQASARGGILDIHFDEQKQRVLLRGKAVSVMEGCLFV 272
           KCD +AY AS RGGI+DIH DEQ QRVLLRGKA++VMEGC+ V
Sbjct: 297 KCDLLAYVASPRGGIVDIHLDEQNQRVLLRGKAITVMEGCVLV 339