Jatropha Genome Database

JcCB0130701.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0130701.20 + phase: 0 /partial
         (279 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007539001 assembled CDS                                       333   4e-92
GSVIVT01009173001 assembled CDS                                        79   2e-15
GSVIVT01020235001 assembled CDS                                        67   7e-12
GSVIVT01010668001 assembled CDS                                        62   3e-10

>GSVIVT01007539001 assembled CDS
          Length = 295

 Score =  333 bits (855), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 165/280 (58%), Positives = 212/280 (75%), Gaps = 3/280 (1%)

Query: 1   MAKRKREVGILPVDVDSSISEAYARASKHRSCWKHMFVSLYAHKKKISKRKAEELRRSFE 60
           M K+K      P+D+ S+ SE+Y   SKHRSCW+HM   L A  K+++K + EE++  FE
Sbjct: 1   MVKKKPRNSNAPIDLASADSESYLDYSKHRSCWRHMVAHLQAQNKRMTKHEIEEIKEIFE 60

Query: 61  LTSKCFLGTFPSRERSKRRIKHKNKIAKVIKENKRLNSAEFDCYFQSLWKSFPEDKRTSF 120
            T+ CF  TFP  ERSKRRI  KN I +  KE K+L++A F+ YF++LWKSF +DK++SF
Sbjct: 61  FTTPCFSNTFPRHERSKRRINCKNIIIR--KEKKKLDTAAFEWYFRNLWKSFSDDKKSSF 118

Query: 121 TYLDSMWFHLYMKAPFKGKVLTWIKRKQIFLKKYVLVPIVGWGHWSLLIFCHLGESSESK 180
            YLD +WF  Y+K   + KVL WIK+K+IF +KYV VPIV W HWSLLI CH GES ESK
Sbjct: 119 GYLDCLWFSFYLKTSSREKVLNWIKKKRIFSRKYVFVPIVCWNHWSLLILCHFGESLESK 178

Query: 181 ARTPCMLLLDSLAVADPRRLEPDIRKFVFDIYRSEGRSENRKLIYQIPLFLPKVPQQRNG 240
            R PCMLLLDSL +A+P+RLEP+IRKFVFDIY+ EGR E+++LI +IPL +PKVPQQRNG
Sbjct: 179 IRAPCMLLLDSLQMANPKRLEPNIRKFVFDIYKEEGRPESKQLISKIPLLVPKVPQQRNG 238

Query: 241 EECGKYVLHFINLFVLGAPDDFSI-KNYPYFMNQNWFSLE 279
           EECG +VL+FINLF+ GAP++FS+ + YPYFM +NWF  E
Sbjct: 239 EECGNFVLYFINLFMDGAPENFSVSEGYPYFMKKNWFGPE 278


>GSVIVT01009173001 assembled CDS
          Length = 617

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 15/157 (9%)

Query: 133 KAPFKGKVLTWIKRKQIFLKKYVLVPIVGWGHWSLLIFCHLGESSESKA-------RTPC 185
           +A F+ +V  W ++  +F K Y+ +P+    HWSLL+ CH G++   K        R PC
Sbjct: 109 RAAFQ-RVRKWTRKVDLFEKDYIFIPVNFNLHWSLLVICHPGDAVNFKDDDVLKSLRVPC 167

Query: 186 MLLLDSLAVADPRRLEPDIRKFVFDIY--RSEGRSENRKLIYQIPLFLP-KVPQQRNGEE 242
           +L +DS+  +    L+  ++ ++++ +  R +  SE+    +    F+P ++PQQ N  +
Sbjct: 168 ILHMDSIKGSH-TGLKNIVQSYLWEEWKERHKETSEDISSKFFNLRFVPLELPQQENSFD 226

Query: 243 CGKYVLHFINLFVLGAPDDFS---IKNYPYFMNQNWF 276
           CG ++LHF  LF+  APD+F+   I  +  F+N NWF
Sbjct: 227 CGLFLLHFAELFLEDAPDNFNPFRITKFCSFLNVNWF 263


>GSVIVT01020235001 assembled CDS
          Length = 221

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 15/148 (10%)

Query: 143 WIKRKQIFLKKYVLVPIVGWGHWSLLIFCHLGESSESKARTPCMLLLDSLAVADPRRLEP 202
           W K   IF K Y+L+PI    HWSL+I C   +  E+    P +L LDSL +   R +  
Sbjct: 54  WWKGVNIFQKAYILLPIHQDHHWSLVIICIPDKEDEA---GPIILHLDSLGLHYSRPIFD 110

Query: 203 DIRKFVFDIYR---SEGRSENRKLIYQIPLFLPK--------VPQQRNGEECGKYVLHFI 251
           DI+ ++ + ++    E  S +  +  +I   LP+        VPQQ+N  +CG +VL F+
Sbjct: 111 DIKSYLKEEWKYLNQEADSADLPIADRIWKHLPRRIEEKVIAVPQQKNDYDCGLFVLFFM 170

Query: 252 NLFVLGAPDDFSIKNYPYFMNQNWFSLE 279
             F+  AP+    K+   F  Q WF  E
Sbjct: 171 ERFIEEAPERLKKKDLAMFGKQ-WFKPE 197


>GSVIVT01010668001 assembled CDS
          Length = 751

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%)

Query: 1  MAKRKREVGILPVDVDSSISEAYARASKHRSCWKHMFVSLYAHKKKISKRKAEELRRSFE 60
          M K+K      P+D  S+  E+Y   SKHRSCW+HM   L+A KK+++K + EE+++  E
Sbjct: 1  MVKKKPRNSNAPIDFTSADFESYLDYSKHRSCWRHMVAHLHAQKKRMTKHEIEEIKKISE 60

Query: 61 LTSKCF 66
           T+ CF
Sbjct: 61 FTTPCF 66