Jatropha Genome Database

JcCB0130701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0130701.10 - phase: 0 /partial
         (272 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007538001 assembled CDS                                       491   e-139

>GSVIVT01007538001 assembled CDS
          Length = 386

 Score =  491 bits (1264), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/272 (88%), Positives = 250/272 (91%)

Query: 1   MEGQEGTQQPHLVLAHKRFLLTHPDVQDIEKVRLKEEVFAAVKDDDMAPLYETLMAEGIL 60
           ME Q+GTQQPHLVLAHK FLLTHPD QDIEKVRLKEEVFAAVK DDMA LYETL A+ +L
Sbjct: 1   MESQDGTQQPHLVLAHKLFLLTHPDAQDIEKVRLKEEVFAAVKVDDMASLYETLAADSVL 60

Query: 61  DKDQSVLDSMRAXXXXXXXXXXXXIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEQ 120
           + DQ+VLD+MRA            IADAEENLGESEVREAHLAKSLF+IRIGDKEKALEQ
Sbjct: 61  EMDQAVLDTMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKEKALEQ 120

Query: 121 MKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY 180
           +KVTESKTVAVGQKMDLVFYTL LGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY
Sbjct: 121 LKVTESKTVAVGQKMDLVFYTLLLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY 180

Query: 181 EGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240
           EGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA
Sbjct: 181 EGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240

Query: 241 PEILTVIGKIPYLSEFLNSLYECQYKSFFSAF 272
           PEIL VIGKIPYLSEFLNSLY+CQYKSFFSAF
Sbjct: 241 PEILAVIGKIPYLSEFLNSLYDCQYKSFFSAF 272