Jatropha Genome Database
- JcCB0130451.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0130451.10 + phase: 0 /TE/pseudo/partial
(421 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01031724001 assembled CDS 132 2e-31
GSVIVT01012382001 assembled CDS 110 1e-24
GSVIVT01000641001 assembled CDS 100 1e-21
GSVIVT01013341001 assembled CDS 100 2e-21
GSVIVT01013655001 assembled CDS 84 1e-16
GSVIVT01028343001 assembled CDS 69 5e-12
GSVIVT01009548001 assembled CDS 67 2e-11
GSVIVT01024357001 assembled CDS 54 1e-07
>GSVIVT01031724001 assembled CDS
Length = 1135
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Query: 248 IKEIGKLGTKPCSALMTPNLQLSI-DGELFDDPEMYRRLVGKLNYLTVTRPDIAYSMSVL 306
++ G +K ++ M LSI DG F+DP +YR LVG L Y T+TRPDIAY+++
Sbjct: 955 LQRAGLSESKLVTSPMAVGHVLSIADGTRFEDPTLYRSLVGALQYCTITRPDIAYTINKF 1014
Query: 307 NQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAGLKVNRRSTSG 366
QFM +PT H +A+ ++ YLKG+ +GL + LD+ ++ AD A +RRST+G
Sbjct: 1015 FQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASCPDDRRSTNG 1074
Query: 367 YCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
YC+F GNLISW + KQ V SRSS++S+YR
Sbjct: 1075 YCIFFRGNLISWSASKQKVVSRSSIESKYRG 1105
>GSVIVT01012382001 assembled CDS
Length = 952
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 71/95 (74%)
Query: 303 MSVLNQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAGLKVNRR 362
+S+++Q+M +PTV+H + +I YLK G G++ +GH DI FS +DWAG ++RR
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRR 810
Query: 363 STSGYCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
ST+GYC+FV GNL+SW+SKKQ V +RSS ++EYRA
Sbjct: 811 STTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRA 845
>GSVIVT01000641001 assembled CDS
Length = 947
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 78/120 (65%)
Query: 278 DPEMYRRLVGKLNYLTVTRPDIAYSMSVLNQFMSSPTVIHWEALGQIFCYLKGNPGHGLL 337
D +Y+++VG L YLT TRPDI +S+S+++++M +PT +H+ A +I YL+G GL
Sbjct: 232 DSIIYKQIVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKDFGLF 291
Query: 338 YSNHGHLDIECFSYADWAGLKVNRRSTSGYCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
Y D+ F+ +D+AG + NRRSTSGY + +SW SKKQ + + S+ ++E+ A
Sbjct: 292 YKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAEFVA 351
>GSVIVT01013341001 assembled CDS
Length = 503
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 58/88 (65%)
Query: 310 MSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAGLKVNRRSTSGYCV 369
M SP H + +I YLKG P GL + H IE F+ ADWAG +RRSTSGYC
Sbjct: 1 MHSPYEAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCT 60
Query: 370 FVSGNLISWRSKKQNVFSRSSVKSEYRA 397
FV GNLI+WRSKKQNV +RSS + ++R+
Sbjct: 61 FVFGNLITWRSKKQNVVARSSAEVKFRS 88
>GSVIVT01013655001 assembled CDS
Length = 4396
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 58/96 (60%)
Query: 302 SMSVLNQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSNHGHLDIECFSYADWAGLKVNR 361
+M+ L+QFM PT HW A+ ++ YL G HG+ L + FS +DWAG K +
Sbjct: 4254 TMNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDF 4313
Query: 362 RSTSGYCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
STS Y +++ N ISW SKKQ +RSS ++EYR+
Sbjct: 4314 TSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRS 4349
>GSVIVT01028343001 assembled CDS
Length = 2295
Score = 68.6 bits (166), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/38 (73%), Positives = 35/38 (92%)
Query: 360 NRRSTSGYCVFVSGNLISWRSKKQNVFSRSSVKSEYRA 397
+RRSTSGYCVF+ GNLISW+SKKQ+V +RSS ++EYRA
Sbjct: 1466 DRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRA 1503
>GSVIVT01009548001 assembled CDS
Length = 849
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 282 YRRLVGKLNYL-TVTRPDIAYSMSVLNQFMSSPTVIHWEALGQIFCYLKGNPGHGLLYSN 340
Y +G L Y RP+I + ++VL +++S+ HW A ++ YL+ L+Y
Sbjct: 596 YASAIGSLMYAQACIRPNIVFIVNVLGRYLSNLGQYHWVAAKKVMRYLQRTNDFMLVYRR 655
Query: 341 HGHLDIECFSYADWAGLKVNRRSTSGYCVFVSGNLISWRSKKQNVFSRSSVKSEYRAWF 399
+L++ +S +D+ G + +STSGY ++G ISW+S KQ++ + S++ +++ A +
Sbjct: 656 VDNLEVVGYSNSDFNGCSDDCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACY 714
>GSVIVT01024357001 assembled CDS
Length = 851
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 111 PKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLPTDKKAIGCKWVFTVKVNPDGSVTR 170
P++ +A+ W AM++E+ ++ N TW LV P DK+ IG KW++ VK + DG + +
Sbjct: 729 PQSFEEAIKDEDWRKAMEKEIDVIEKNETWQLVEKPIDKEIIGVKWIYRVKCHSDGYICK 788