Jatropha Genome Database

JcCB0130221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0130221.10 - phase: 2 /partial
         (375 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003940001 assembled CDS                                       649   0.0  
GSVIVT01024702001 assembled CDS                                       633   0.0  
GSVIVT01021184001 assembled CDS                                       594   e-170
GSVIVT01004503001 assembled CDS                                       222   2e-58
GSVIVT01005052001 assembled CDS                                       222   3e-58

>GSVIVT01003940001 assembled CDS
          Length = 605

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/375 (81%), Positives = 328/375 (87%)

Query: 1   LSNKLGLXXXXXXXXXFLNKAVKPVLVGGPKLRVAKATEAFVELADASGYALAVMPSAKG 60
           ++N++GL         FLNKAVKPV+VGGPKLRVAKA EAFVELADA GY +AVMPSAKG
Sbjct: 231 VTNQMGLEAAVEAAAAFLNKAVKPVMVGGPKLRVAKACEAFVELADACGYPVAVMPSAKG 290

Query: 61  FVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQ 120
            VPE HP FIGTYWGAVSTAFCAEIVESAD+Y+FAGPIFNDYSSVGYSLLLKK+KAI+VQ
Sbjct: 291 LVPECHPRFIGTYWGAVSTAFCAEIVESADSYIFAGPIFNDYSSVGYSLLLKKDKAILVQ 350

Query: 121 PDRVVIGNGPAFGCVLMKDFXXXXXXXXXXNNTAYENYRRIFVPDGHPLKSDPKEPLRVN 180
           P+RVVIGNGPAFGC+LMKDF          N TAYENY RI+VP+G PL+SDPKEPLRVN
Sbjct: 351 PERVVIGNGPAFGCILMKDFLKALSKRLKCNTTAYENYHRIYVPEGQPLRSDPKEPLRVN 410

Query: 181 ILFQHIQNMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQA 240
           +LFQHIQ MLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQA
Sbjct: 411 VLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQA 470

Query: 241 VPEKRVIACIGDGSFQVTAQDISTMLRCGQRTIIFLINNGGYTIEVEIHDGPYNVIKNWN 300
           VP KRVI+CIGDGSFQVTAQD+STM+RC QRTIIFLINNGGYTIEVEIHDGPYNVIKNWN
Sbjct: 471 VPNKRVISCIGDGSFQVTAQDVSTMIRCEQRTIIFLINNGGYTIEVEIHDGPYNVIKNWN 530

Query: 301 YTGLIDAIHNGEGKCWTTKVXXXXXXXXXXXXXXGSKKDCLCFIEVVVHKDDTSKELLEW 360
           YTGL+DAIHNGEGKCWTTKV              GSKKDC CFIEV+ HKDDTSKELLEW
Sbjct: 531 YTGLVDAIHNGEGKCWTTKVVCEEDLINAIETATGSKKDCFCFIEVIAHKDDTSKELLEW 590

Query: 361 GSRVSAANSRPPNPQ 375
           GSRVSAANSRPPNPQ
Sbjct: 591 GSRVSAANSRPPNPQ 605


>GSVIVT01024702001 assembled CDS
          Length = 577

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/375 (80%), Positives = 321/375 (85%)

Query: 1   LSNKLGLXXXXXXXXXFLNKAVKPVLVGGPKLRVAKATEAFVELADASGYALAVMPSAKG 60
           +SN  GL         FLNKAVKPV+VGGPKLRVAKAT+AFVELADA GYALAVMPSAKG
Sbjct: 203 MSNCKGLDAAVEAAAAFLNKAVKPVIVGGPKLRVAKATKAFVELADACGYALAVMPSAKG 262

Query: 61  FVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQ 120
            VPEHHPHFIGTYWGAV TAFC EIVESADAY+F GPIFNDYSSVGYSLLLK+EKAIIVQ
Sbjct: 263 LVPEHHPHFIGTYWGAVGTAFCGEIVESADAYVFVGPIFNDYSSVGYSLLLKREKAIIVQ 322

Query: 121 PDRVVIGNGPAFGCVLMKDFXXXXXXXXXXNNTAYENYRRIFVPDGHPLKSDPKEPLRVN 180
           P+RVVI NGPAFGCVLMKDF          N TAYENYRRI +PDG PLK +P EPLRVN
Sbjct: 323 PERVVIANGPAFGCVLMKDFLPALAKRLNNNTTAYENYRRIHIPDGVPLKCEPTEPLRVN 382

Query: 181 ILFQHIQNMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQA 240
           ILFQHIQ +LS +TAVIAETGDSWFNCQKLKLP+GCGYEFQMQYGSIGWSVGA LGYAQ+
Sbjct: 383 ILFQHIQKLLSHDTAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGAMLGYAQS 442

Query: 241 VPEKRVIACIGDGSFQVTAQDISTMLRCGQRTIIFLINNGGYTIEVEIHDGPYNVIKNWN 300
           VP+KRVIACIGDGSFQVTAQD+STM+RC Q++IIFLINNGGYTIEVEIHDGPYNVIKNWN
Sbjct: 443 VPDKRVIACIGDGSFQVTAQDVSTMIRCEQKSIIFLINNGGYTIEVEIHDGPYNVIKNWN 502

Query: 301 YTGLIDAIHNGEGKCWTTKVXXXXXXXXXXXXXXGSKKDCLCFIEVVVHKDDTSKELLEW 360
           YTGL+DAIHNGEG CWT KV              G KKDCLCFIEVVVHKDDTSKELLEW
Sbjct: 503 YTGLVDAIHNGEGNCWTKKVNNEQELIEAIEIATGEKKDCLCFIEVVVHKDDTSKELLEW 562

Query: 361 GSRVSAANSRPPNPQ 375
           GSRVS+ANSR PNPQ
Sbjct: 563 GSRVSSANSRAPNPQ 577


>GSVIVT01021184001 assembled CDS
          Length = 577

 Score =  594 bits (1532), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 279/375 (74%), Positives = 308/375 (82%)

Query: 1   LSNKLGLXXXXXXXXXFLNKAVKPVLVGGPKLRVAKATEAFVELADASGYALAVMPSAKG 60
           +SN++GL         FLN+AVKPV+VGGPKLRVAKA  A +ELADASGY +AVMPS KG
Sbjct: 203 VSNQIGLEAAVEATADFLNRAVKPVIVGGPKLRVAKAQRALMELADASGYPIAVMPSGKG 262

Query: 61  FVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQ 120
            VPE HPHFIGTYWGAVST FC EIVESADAY+FAGPIFNDYSSVGYSLL+KKEKA+IV+
Sbjct: 263 LVPEQHPHFIGTYWGAVSTTFCGEIVESADAYVFAGPIFNDYSSVGYSLLIKKEKAVIVE 322

Query: 121 PDRVVIGNGPAFGCVLMKDFXXXXXXXXXXNNTAYENYRRIFVPDGHPLKSDPKEPLRVN 180
           P+RV +GNGP+FG V M DF          N TA ENYRRI+VP G PL+ +  E LRVN
Sbjct: 323 PNRVTVGNGPSFGWVFMADFLSALAKKLKKNETAVENYRRIYVPPGVPLRREEHEALRVN 382

Query: 181 ILFQHIQNMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQA 240
           +LF+HIQ+ML   +AVIAETGDSWFNCQKL+LP+ CGYEFQMQYGSIGWSVGATLGYAQ 
Sbjct: 383 VLFKHIQDMLDGNSAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQG 442

Query: 241 VPEKRVIACIGDGSFQVTAQDISTMLRCGQRTIIFLINNGGYTIEVEIHDGPYNVIKNWN 300
             +KRVIACIGDGSFQVTAQD+STM+RCGQRTIIFLINNGGYTIEVEIHDGPYNVIKNW+
Sbjct: 443 AKDKRVIACIGDGSFQVTAQDVSTMIRCGQRTIIFLINNGGYTIEVEIHDGPYNVIKNWD 502

Query: 301 YTGLIDAIHNGEGKCWTTKVXXXXXXXXXXXXXXGSKKDCLCFIEVVVHKDDTSKELLEW 360
           YT LI+AIHNGEGKCWT KV              G+ KD LCFIEV VHKDDTSKELLEW
Sbjct: 503 YTALINAIHNGEGKCWTAKVRTEDELTEAIATATGAHKDSLCFIEVFVHKDDTSKELLEW 562

Query: 361 GSRVSAANSRPPNPQ 375
           GSRVSAAN RPPNPQ
Sbjct: 563 GSRVSAANGRPPNPQ 577


>GSVIVT01004503001 assembled CDS
          Length = 550

 Score =  222 bits (565), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 126/171 (73%), Gaps = 8/171 (4%)

Query: 97  PIFNDYSSVGYSLLLKKEKAIIVQPDRVVIGNGPAFGCVLMKDFXXXXXXXXXXNNTAYE 156
           P+ +D+ SV  S+       ++     + + NGPAFGC+LMKDF          N TAYE
Sbjct: 87  PVHSDHCSVCSSIF---SHTVLC----LSLANGPAFGCILMKDFLKSLSKRLKCNTTAYE 139

Query: 157 NYRRIFVPDGHPLKSDPKEPLRVNILFQHIQNMLSSETAVIAETGDSWFNCQKLKLPKGC 216
           NY R++VP+G   K DPKEPLRV +LFQHIQ MLSSETAVIAET DSWFNCQKLKLP+GC
Sbjct: 140 NYHRVYVPEGQSPKPDPKEPLRVYVLFQHIQKMLSSETAVIAETEDSWFNCQKLKLPRGC 199

Query: 217 GYEFQMQYGSIGWSVGATLGYAQAVPEKRV-IACIGDGSFQVTAQDISTML 266
            YEFQMQYGSIGW VG TLGYAQA+P KRV IACIGDGSF VT  DISTM+
Sbjct: 200 RYEFQMQYGSIGWLVGVTLGYAQALPNKRVMIACIGDGSFYVTLLDISTMI 250


>GSVIVT01005052001 assembled CDS
          Length = 537

 Score =  222 bits (565), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 112/171 (65%), Positives = 126/171 (73%), Gaps = 8/171 (4%)

Query: 97  PIFNDYSSVGYSLLLKKEKAIIVQPDRVVIGNGPAFGCVLMKDFXXXXXXXXXXNNTAYE 156
           P+ +D+ SV  S+       ++     + + NGPAFGC+LMKDF          N TAYE
Sbjct: 93  PVRSDHCSVCSSIF---SHTVLC----LSLANGPAFGCILMKDFLKSLSKRLKCNTTAYE 145

Query: 157 NYRRIFVPDGHPLKSDPKEPLRVNILFQHIQNMLSSETAVIAETGDSWFNCQKLKLPKGC 216
           NY R +VP+G   KSDPKEPLRV +LFQHIQ MLSSETAVIAETGDSWFNCQKLKLP+GC
Sbjct: 146 NYHRDYVPEGQSPKSDPKEPLRVYVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPRGC 205

Query: 217 GYEFQMQYGSIGWSVGATLGYAQAVPEKRV-IACIGDGSFQVTAQDISTML 266
            YEFQMQY SIGW VG TLGYAQAVP KRV IACIGDGSF VT  DISTM+
Sbjct: 206 RYEFQMQYRSIGWLVGVTLGYAQAVPNKRVMIACIGDGSFYVTLLDISTMI 256