Jatropha Genome Database

JcCB0129921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0129921.10 - phase: 2 /TE
         (999 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004252001 assembled CDS                                       104   2e-22
GSVIVT01032339001 assembled CDS                                        72   2e-12
GSVIVT01004123001 assembled CDS                                        68   3e-11
GSVIVT01037358001 assembled CDS                                        67   3e-11
GSVIVT01001301001 assembled CDS                                        66   7e-11
GSVIVT01003937001 assembled CDS                                        61   3e-09
GSVIVT01004860001 assembled CDS                                        55   2e-07

>GSVIVT01004252001 assembled CDS
          Length = 533

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 122/254 (48%), Gaps = 12/254 (4%)

Query: 706 LIAPNLNCSLKDWPIKYLALLLGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLI 765
           ++A  L C +   P  YL L LG+  +    W+ +   ++ RLA  + + LS+ G + LI
Sbjct: 16  MLAVELGCKVGTLPSVYLGLPLGAKHKAMAMWDGVEARMRKRLALWKRQYLSKGGRITLI 75

Query: 766 KSVLHSLPTYSLSLFVFRQVXLQXLKN-SRNIFWNASVDKKALATISXDLIKLQRRMGGL 824
           KS L SLP Y LS F   ++ ++ L+   R+  W     ++ +  I+ +++  Q+  GGL
Sbjct: 76  KSTLASLPIYQLSFFRMPKLVVKRLEKLQRDFLWGGGSMERKIHLINWEVVCTQKESGGL 135

Query: 825 GIGFILEKNYALLFKWVCRFASNEESLWKSFITKKVSLSHKGFX-XXXXXXXXXXXXXWA 883
           GI  I   N ALL KW+ RFA  E   W+  +   V     GF               W 
Sbjct: 136 GIRKIDLLNKALLGKWIWRFAFEENFFWRKVVG--VKYGQLGFGWRTKEARGTFGVGVWR 193

Query: 884 DIYKIFKNGEFKAWINLKTKVFVGNRKXTFFWSEHWVGDQPLSLSFPRLHWLSSNPNGII 943
           DI K         W N++ KV  G +    FW++HW G++ LS +FP+L  L+   N  +
Sbjct: 194 DILK----DSSWCWDNIEFKVGKGTK--VSFWTDHWCGNEVLSQAFPQLFALAVQRNASV 247

Query: 944 SQFGEWSNGIGFGN 957
           ++   W + +G G 
Sbjct: 248 NEM--WDSSLGQGG 259


>GSVIVT01032339001 assembled CDS
          Length = 235

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 20/200 (10%)

Query: 754 KLLSRAGILVLIKSVLHSLPTYSLSLF-VFRQVXLQXLKNSRNIFWNASVDKKALATISX 812
           + +S+ G L  IKS+L SLP Y +SLF + R+V L+  K  RN  W   +       +  
Sbjct: 5   QYISKGGRLTPIKSMLSSLPIYFISLFQMSRRVRLRLEKIYRNFLWGGGMLGNKPQLVKW 64

Query: 813 DLIKLQRRMGGLGIGFILEKNYALLFKWVCRFASNEESLWKSFITKKVSLSHKGFXXXXX 872
           D++ L +R GGL +  +   N AL+ KW+  F    ++ W+     K      G+     
Sbjct: 65  DIVCLDKRKGGLRVRCLNSLNMALICKWIWCFYKEMDAFWRKVFCGKFGELEGGWCS--- 121

Query: 873 XXXXXXXXXWADIYKIFKNGEFKA----W--INLKTKVFVGNRKXTFFWSEHWVGDQPLS 926
                      ++   +  G +KA    W  ++ +T   VG  +   FW + W GD+PL 
Sbjct: 122 ----------KEVRGSYGVGLWKAIRLLWELVSSRTLFVVGYGRRVKFWRDRWWGDEPLC 171

Query: 927 LSFPRLHWLSSNPNGIISQF 946
           +SFP L  L+S+    ++  
Sbjct: 172 MSFPSLFALASSKEAWVADL 191


>GSVIVT01004123001 assembled CDS
          Length = 386

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 763 VLIKSVLHSLPTYSLSLFVFRQVXLQXL-KNSRNIFWNASVDKKALATISXDLIKLQRRM 821
            LI+S L +LP Y +SL     V  + L K  R+  W     ++    +  +++ L ++ 
Sbjct: 76  TLIRSTLSNLPIYLMSLLCLPSVVRRRLEKIQRDFLWGGGNLERKPHLVRWEVVCLSKKK 135

Query: 822 GGLGIGFILEKNYALLFKWVCRFASNEESLWKSFITKKVSLSHKGFXXXXXXXXXXXXXX 881
           GGLG+  +   N ALL KW  RFA+  E+LW   I  K     +G               
Sbjct: 136 GGLGVKNLSILNKALLAKWNWRFANEREALWNQVIRGKYG-EERGGWSSREVREAHGLGL 194

Query: 882 WADIYKIFKNGEFKAWINLKTKVFVGNRKXTFFWSEHWVGDQPLSLSFPRL 932
           W  I     N E    ++ +    VGN +   FW + W GD PL LSFP L
Sbjct: 195 WKGIR---MNWEL---VSNRLVFIVGNGRRVRFWRDKWCGDSPLCLSFPSL 239


>GSVIVT01037358001 assembled CDS
          Length = 2456

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 756  LSRAGILVLIKSVLHSLPTYSLSLF-VFRQVXLQXLKNSRNIFWNASVDKKALATISXDL 814
            LS  G + LI+S L  +P Y LSLF +   V  +  +  R+  W+   + K    +S D+
Sbjct: 863  LSFGGRITLIQSCLTHMPCYFLSLFKIPTSVVAKIERLQRDFLWSGIEEGKRNHLVSWDV 922

Query: 815  IKLQRRMGGLGIGFILEKNYALLFKWVCRFASNEESLWKSFITKKVSLSHKGFXXXXXXX 874
            +   +  GGLG G I  +N ALL KW+ R+     +LW   I   +  SH          
Sbjct: 923  VCNPKAKGGLGFGKISLRNLALLGKWLWRYLREGSALWHQVIL-SIYGSHSNGWDANTLV 981

Query: 875  XXXXXXXWADIYKIFKNGEFKAWINLKTKVFVGNRKXTFFWSEHWVGDQPLSLSFPRLHW 934
                   W  I ++F+  EF  +    T+  VGN +    W + W GDQ L   +PRL  
Sbjct: 982  RWSHRCPWKAIAQVFQ--EFSMF----TRFVVGNGERILLWEDLWWGDQSLGSQYPRLFR 1035

Query: 935  LSSNPNGIIS 944
            +  + N  IS
Sbjct: 1036 VVMDKNIPIS 1045


>GSVIVT01001301001 assembled CDS
          Length = 325

 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 1/142 (0%)

Query: 727 LGSSPRRKTFWEPLIQCIKSRLASXEGKLLSRAGILVLIKSVLHSLPTYSLSLFVF-RQV 785
           LG+  R  T W+ + + ++ + A  + + +S+ G + LI S L S+P Y +S+    R+V
Sbjct: 151 LGAPYRSLTVWDGVEERMRKKSARWKSQYISKGGRITLIWSTLASMPIYFMSMLSMPRKV 210

Query: 786 XLQXLKNSRNIFWNASVDKKALATISXDLIKLQRRMGGLGIGFILEKNYALLFKWVCRFA 845
            L+  +  R+  W     ++ L  +  DL+ L++  GGLG+  +   N  LL KW  RFA
Sbjct: 211 RLRLERIQRDFLWGGGALERKLHLVRWDLVCLEKCNGGLGVKSLSILNKTLLCKWSWRFA 270

Query: 846 SNEESLWKSFITKKVSLSHKGF 867
              E+ W   I  K      G+
Sbjct: 271 IEREAFWNQVIRGKYGEEQGGW 292


>GSVIVT01003937001 assembled CDS
          Length = 354

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 7/151 (4%)

Query: 794 RNIFWNASVDKKALATISXDLIKLQRRMGGLGIGFILEKNYALLFKWVCRFASNEESLWK 853
           R+  W+   + K    +S D++   +   GLG G I+ +N ALL KW+ R+     +LW 
Sbjct: 24  RDFLWSGVGEGKRDYLVSWDVVCKLKAKRGLGFGKIVLRNVALLGKWLWRYPRKGSALWH 83

Query: 854 SFITKKVSLSHKGFXXXXXXXXXXXXXXWADIYKIFKNGEFKAWINLKTKVFVGNRKXTF 913
             I   +  SH                 W  I ++F+  EF  +    T+  VG+ +   
Sbjct: 84  QVIL-SIYGSHSNGWDANTIVKWLHRCPWKAIAQVFQ--EFSKF----TRFVVGDEERIR 136

Query: 914 FWSEHWVGDQPLSLSFPRLHWLSSNPNGIIS 944
           FW + W GDQPL   +PRL  + ++ N +IS
Sbjct: 137 FWEDLWWGDQPLESQYPRLFRVVTDKNILIS 167


>GSVIVT01004860001 assembled CDS
          Length = 1243

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 9/163 (5%)

Query: 794 RNIFWNASVDKKALATISXDLIKLQRRMGGLGIGFILEKNYALLFKWVCRFASNEESLWK 853
           R+  W  +   K    +  +++   +  GGLG+  +   N ALL KW+ RFA  +E +WK
Sbjct: 14  RDFLWEGANGGKKAHLVKWEVVCADKEKGGLGLRKLACLNKALLGKWIWRFARAKEDIWK 73

Query: 854 SFITKKVSLSHKGFXXXXXXXXXXXXXXWADIYKIFKNGEFKAWINLKTKVFVGNRKXTF 913
             +  K      G+              W +I K F       W N+  KV  GN+    
Sbjct: 74  KVLEAKYGQEDFGW-RTRKANGVFGVGVWKEILKEFA----WCWENMVFKVGKGNK--IR 126

Query: 914 FWSEHWVGDQPLSLSFPRLHWLSSNPNGIISQFGEWSNGIGFG 956
           FW + W G+   S SFP L  +++  N  + +   W    G G
Sbjct: 127 FWIDPWCGNNVPSQSFPNLFSMAAQRNVTVEEM--WDQNFGQG 167