Jatropha Genome Database

JcCB0128761.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0128761.20 + phase: 0 /TE/pseudo/partial
         (89 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                        52   6e-08

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score = 51.6 bits (122), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%)

Query: 2    IRRSASKLSVGP*EKSTDRFRSPESRRLNEARQKWSTYEQELYAVF*AFKTWEHYLLGRE 61
            I   AS + +G       +  +  SR+L +  + +  ++ EL AV  A KTW HYL G +
Sbjct: 1142 IYCDASTVGLGCVLMQQGKVVAYASRQLKQHERNYPAHDLELAAVVFALKTWRHYLYGEK 1201

Query: 62   FIIYTDHQALTHLQTQKKVS 81
            F +Y+DH++L ++ TQK ++
Sbjct: 1202 FEVYSDHKSLKYIFTQKDLN 1221