Jatropha Genome Database

JcCB0128551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0128551.10 + phase: 0 /pseudo/partial
         (257 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035890001 assembled CDS                                       239   8e-64
GSVIVT01023587001 assembled CDS                                       235   1e-62
GSVIVT01038453001 assembled CDS                                       208   2e-54
GSVIVT01004270001 assembled CDS                                       164   3e-41
GSVIVT01002731001 assembled CDS                                       163   7e-41
GSVIVT01008876001 assembled CDS                                       117   4e-27
GSVIVT01001552001 assembled CDS                                        85   3e-17
GSVIVT01034216001 assembled CDS                                        73   1e-13

>GSVIVT01035890001 assembled CDS
          Length = 899

 Score =  239 bits (610), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/222 (52%), Positives = 164/222 (73%)

Query: 1   RLEVSLSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNA 60
           ++E  L KV QSPS SM  ALS S  ALV+D+LLRHSD DVKV+VA CISEI RITAP+A
Sbjct: 35  QVENCLLKVEQSPSMSMQNALSASLKALVTDQLLRHSDIDVKVAVAACISEITRITAPDA 94

Query: 61  PYGDEQMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDM 120
           PY D+QMKE+F LI++ F+KLS  SS  Y K  S+L T+A +R+ VVM+DLEC +LI++M
Sbjct: 95  PYDDDQMKEIFQLIVSSFEKLSDRSSRSYDKRTSILETVAKVRSCVVMLDLECDALIIEM 154

Query: 121 FHLFLRVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKL 180
           F  FL   R +  + V ++M + MT+ + ES++I  E+L P+LAS++K+NQ V   + KL
Sbjct: 155 FQHFLNAIRDDHPENVFTSMETIMTLVLEESEDIPTELLSPILASIKKDNQEVLPIARKL 214

Query: 181 GKEVIGNCAAKIQPYVLKAVNSLGVSVDSYDEVIASICRNAT 222
           G++V  NCA K++P +++AV SLG+S+D Y +V++SIC+  +
Sbjct: 215 GEKVFENCANKLKPCLMQAVKSLGISLDDYSKVVSSICQGTS 256


>GSVIVT01023587001 assembled CDS
          Length = 764

 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/226 (53%), Positives = 161/226 (71%)

Query: 1   RLEVSLSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNA 60
           +LE  L+KV QSPS SM  A+ P+  ALV  +LL H D DV+V VA CISEI RITAP+A
Sbjct: 35  KLESFLAKVEQSPSKSMQTAVCPAMKALVVKELLNHLDVDVRVVVASCISEITRITAPDA 94

Query: 61  PYGDEQMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDM 120
           PY D+QMKE+F LI+A F+ LS  SS  Y K VS+L T+A +R+ VVM+DLEC SLI+ M
Sbjct: 95  PYDDDQMKEIFELIVATFENLSDTSSRSYPKRVSILETVAKVRSCVVMLDLECDSLIIKM 154

Query: 121 FHLFLRVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKL 180
           F  FL   R   SD V S+M + MT+ + ES+E+S E+L PLL S+R  NQ+V   + KL
Sbjct: 155 FKHFLGTIRETHSDDVYSSMETIMTLVLEESEEVSPELLAPLLDSLRVGNQDVLLIARKL 214

Query: 181 GKEVIGNCAAKIQPYVLKAVNSLGVSVDSYDEVIASICRNATDNVK 226
           GK+VI NCA K++PY+++AV  +G  +D+Y E++ASIC+  +D +K
Sbjct: 215 GKKVIQNCALKLRPYMMQAVEFMGFPLDNYYEIVASICQETSDAIK 260


>GSVIVT01038453001 assembled CDS
          Length = 228

 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/222 (46%), Positives = 152/222 (68%), Gaps = 1/222 (0%)

Query: 20  ALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYGDEQMKEVFHLILAVFQ 79
           ALS    ALV+D++L+H + DVKVS   CISEI RITAP+APY D QM E+F L +A F+
Sbjct: 6   ALSSLMEALVADQILKHGNGDVKVSAVACISEITRITAPDAPYDDNQMTEIFQLTVASFE 65

Query: 80  KLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHLFLRVTRSNSSDVVLSA 139
            LS  +S CYSK + +L ++AT R  +VM+DLEC  +I+DMF LFL V RS+  + V SA
Sbjct: 66  NLSDTTSPCYSKAILILKSVATYRWCLVMLDLECDQIIIDMFQLFLNVIRSDHPEEVFSA 125

Query: 140 MVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKEVIGNCAAKIQPYVLKA 199
           M + MT+ + ES+ + +E++ P+LA+VRK+N+NV    W+LG++VI NCA K++PY+++ 
Sbjct: 126 METIMTLVMDESEYVLVELVSPILATVRKDNKNVSPICWRLGEKVITNCADKLRPYLIEV 185

Query: 200 VNSLGVSVDSYDEVIASICRNATDNVK-SFYAPDSEKHLVSM 240
           V  LG  +  Y   +A+I +N ++  + +     S +HLVS 
Sbjct: 186 VKCLGTRLSDYAPAVATIYQNESNTRQNNLNDSGSREHLVSF 227


>GSVIVT01004270001 assembled CDS
          Length = 387

 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 143/223 (64%), Gaps = 7/223 (3%)

Query: 6   LSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYGDE 65
           L+++ QSPSAS++ +L PS NA+V  +LL+H D DVK+ VA CI EI RITAP APY D+
Sbjct: 73  LTELDQSPSASILESLQPSLNAIVKPELLKHQDRDVKLLVATCICEITRITAPEAPYSDD 132

Query: 66  QMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHLFL 125
            +K++F LI++ F  LS  +   + + V +L T+A  R+ VVM+DLEC  L+ +MF  F 
Sbjct: 133 VLKDIFRLIVSTFSGLSDTNGPAFGRRVVILETLARYRSCVVMLDLECDDLVNEMFRTFF 192

Query: 126 RVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKEVI 185
            V R +  + VL++M + M + + ES+++  ++LF +L+ + +   +V + + +L   VI
Sbjct: 193 SVARDDHPESVLTSMQTIMVVLLEESEDVREDLLFSILSILGRNKSDVTTAARRLAMNVI 252

Query: 186 GNCAAKIQP----YVLKAVNSLGVSVDS---YDEVIASICRNA 221
            +CAAK++P    +++ +++    S++S   Y EVI  I R A
Sbjct: 253 EHCAAKLEPGIKQFLVSSISGDNRSMNSEIDYHEVIYDIYRCA 295


>GSVIVT01002731001 assembled CDS
          Length = 778

 Score =  163 bits (413), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 143/223 (64%), Gaps = 7/223 (3%)

Query: 6   LSKVTQSPSASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYGDE 65
           L+++ QSPSAS++ +L PS NA+V  +LL+H D DVK+ VA CI EI RITAP APY D+
Sbjct: 37  LTELDQSPSASILESLQPSLNAIVKPELLKHQDRDVKLLVATCICEITRITAPEAPYSDD 96

Query: 66  QMKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHLFL 125
            +K++F LI++ F  LS  +   + + V +L T+A  R+ VVM+DLEC  L+ +MF  F 
Sbjct: 97  VLKDIFRLIVSTFSGLSDTNGPAFGRRVVILETLARYRSCVVMLDLECDDLVNEMFRTFF 156

Query: 126 RVTRSNSSDVVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKEVI 185
            V R +  + VL++M + M + + ES+++  ++LF +L+ + +   +V + + +L   VI
Sbjct: 157 SVARDDHPESVLTSMQTIMVVLLEESEDVREDLLFSILSILGRNKSDVTTAARRLAMNVI 216

Query: 186 GNCAAKIQP----YVLKAVNSLGVSVDS---YDEVIASICRNA 221
            +CAAK++P    +++ +++    S++S   Y EVI  I R A
Sbjct: 217 EHCAAKLEPGIKQFLVSSISGDNRSMNSEIDYHEVIYDIYRCA 259


>GSVIVT01008876001 assembled CDS
          Length = 1450

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 123/211 (58%), Gaps = 10/211 (4%)

Query: 15  ASMIAALSPSRNALVSDKLLRHSDTDVKVSVAVCISEIMRITAPNAPYGDEQMKEVFHLI 74
           +S+  A+ P   + V   LL + D DVK+ VA+C SEI+R+ AP  P+ D++++E+F L 
Sbjct: 45  SSLEPAIKPLSGSFVKHGLLHNKDKDVKLLVAICCSEIIRVMAPEPPFDDKELREIFELF 104

Query: 75  LAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHLFLRVTRSNSSD 134
           +++F +L++ +S  +S+ V +L T A     ++M+D+ C  L+++MF+ F  V R +   
Sbjct: 105 VSMFAELANTTSPYFSRRVKILETFAKYNFCMLMLDINCDILVLEMFNTFFSVAREHHQQ 164

Query: 135 VVLSAMVSTMTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKEVIGNCAAKIQP 194
            V+ A++S MT+ + E  ++S  +L  +L ++ KE +   ++  ++   V+ NCA +++P
Sbjct: 165 SVVKAILSIMTLILKE--KVSQPLLDVILQNLLKEGKGATASPSRIAVSVVQNCAEELEP 222

Query: 195 YVLKAVNSLGVSVDS--------YDEVIASI 217
           +V   + S  +  D+        Y E+I  I
Sbjct: 223 FVCGFLTSCILDRDAVGNELKEFYHEIIFEI 253


>GSVIVT01001552001 assembled CDS
          Length = 99

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 66/99 (66%), Gaps = 3/99 (3%)

Query: 144 MTIAILESDEISLEILFPLLASVRKENQNVFSTSWKLGKEVIGNCAAKIQPYVLKAVNSL 203
           MT+ I ESD + +E+L P+LA+VRK+N+NV    W+LG+++I NCAAK++PY+++ V  L
Sbjct: 1   MTLVIDESDYVLVELLSPILATVRKDNKNVSPICWRLGEKIITNCAAKLRPYLMEVVKCL 60

Query: 204 GVSVDSYDEVIASICRNATDNVKSFYAPDS--EKHLVSM 240
           G  +  Y   +A IC+N + N +     DS   +HLVS 
Sbjct: 61  GTRLSDYAPAVAIICQNES-NTRQNNHHDSGLGEHLVSF 98


>GSVIVT01034216001 assembled CDS
          Length = 63

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 45/63 (71%)

Query: 67  MKEVFHLILAVFQKLSHMSSCCYSKVVSVLVTIATIRAIVVMVDLECHSLIVDMFHLFLR 126
           M E+F L +A F+ LS M S CYSK VS+L ++AT R  +VM+DLEC  +I+DMF LFL 
Sbjct: 1   MTEIFRLTVASFENLSDMRSPCYSKAVSILKSVATYRWCLVMLDLECDRIIIDMFQLFLN 60

Query: 127 VTR 129
           V R
Sbjct: 61  VIR 63