Jatropha Genome Database

JcCB0127031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0127031.10 + phase: 0 
         (197 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036533001 assembled CDS                                       174   3e-44
GSVIVT01008164001 assembled CDS                                       107   3e-24
GSVIVT01010100001 assembled CDS                                       100   4e-22

>GSVIVT01036533001 assembled CDS
          Length = 402

 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/216 (48%), Positives = 131/216 (60%), Gaps = 33/216 (15%)

Query: 11  PVEALLDHPQGLKNGSAHENT-----AILTNVHNSIDSDLGATA---------------V 50
           PVE  +DH Q +KNGS HEN      A L N  N ++SD G  A               V
Sbjct: 183 PVENFMDHSQVIKNGSGHENNVAVTPATLVNAQNPVESDFGTAAAYNVMDNTPGPASQAV 242

Query: 51  PFNVQVHSNMFV-VGKSGVTTQPVQESVSDAENMEFQLQPQQWHGRPCATECDAPNNTVN 109
           P N+ + +NMF  VG+S + TQ +  SVSD EN+  Q  P   HGRPC T+C  P+NTVN
Sbjct: 243 PLNMPLQTNMFTHVGRSDIPTQSLHGSVSDVENIASQPLPHFSHGRPCTTDCAVPSNTVN 302

Query: 110 GQEEPMGETGSDSISSTYSQGILDTLTQALQSSGVDLSQTNISVQIDVGK---QGSNIVA 166
             EE   E+G+ SISS YSQG+L++LTQALQSSGVDLSQ +ISVQID+GK   +G N   
Sbjct: 303 EPEELTIESGTVSISSAYSQGLLNSLTQALQSSGVDLSQASISVQIDIGKRANKGLNATT 362

Query: 167 SNSKDQENPFLNNQAL---------EDSNRARKRSR 193
           SN+KD ENP  +N+ +         EDS++A KR R
Sbjct: 363 SNAKDYENPSPSNRTMAHSGFRSSSEDSDQAHKRLR 398


>GSVIVT01008164001 assembled CDS
          Length = 565

 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 114/220 (51%), Gaps = 39/220 (17%)

Query: 6   KNHHPPVEALLDHPQGLKNGSA----------HENTAILTNV----HNSIDSDLGAT--- 48
           +N H P E+  D  +G+ +GS             N A+  N+     N ++SDL A+   
Sbjct: 333 RNSHRPAESFADQSRGINSGSGPALMFSAKFDENNVAVSPNISRNTQNPVESDLSASTTF 392

Query: 49  ------------AVPFNVQVHSNMF--VVGKSGVTTQPVQESVSDAENMEFQLQPQQWHG 94
                       AVP ++Q+  N+F  VVG  G+   P + +  DAENM    Q Q W  
Sbjct: 393 KAMDRHPGLTNKAVPIHMQLQPNIFTPVVGGGGLAQLPPRLA-PDAENMASLPQSQLWQS 451

Query: 95  RP-CATECDAPNNTVNGQEEPMGETGSDSISSTYSQGILDTLTQALQSSGVDLSQTNISV 153
           R    TEC   ++ +  QE  + E G+ SISS YSQG+L+TLTQALQSSGVDLS+ +ISV
Sbjct: 452 RSSVTTECTVASDKLKEQELTI-EGGTISISSAYSQGLLNTLTQALQSSGVDLSKASISV 510

Query: 154 QIDVGKQGSNIVASNSKDQENPFLNNQALEDSNRARKRSR 193
           QID+G +     A++      P + +  +  SN A  RSR
Sbjct: 511 QIDLGNK-----ANSRPTAPTPIIKDNQVPSSNHATARSR 545


>GSVIVT01010100001 assembled CDS
          Length = 328

 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 57/227 (25%)

Query: 6   KNHHPPVEALLDHPQGLKNGSA---------HEN-----TAILTNVHNSIDSDLGATAV- 50
           +N H  V++ + HPQ + NGS           EN     + +L    N ++SDL   A  
Sbjct: 115 RNSHWRVQSFVGHPQAINNGSGPGSAFSGKFDENNINITSTMLVKAQNPVESDLSRDATC 174

Query: 51  -------PFN------VQVHSNMFV-VGKSGVTTQPVQESVSDAENMEFQLQPQQWHGRP 96
                   FN      + + SNM   V   G    P+Q  VSDA+               
Sbjct: 175 KAMDHQSEFNKAIVMPISLQSNMSAPVQSEGGLVHPLQGPVSDAQ--------------- 219

Query: 97  CATECDAPNNTVNGQEEPMGETGSDSISSTYSQGILDTLTQALQSSGVDLSQTNISVQID 156
            + +C   + T++ +EE M E G+ SISS YSQG+L+TLTQALQSSGVDLSQ +ISVQID
Sbjct: 220 -SADCPITSETLSKKEELMIEGGTISISSAYSQGLLNTLTQALQSSGVDLSQASISVQID 278

Query: 157 VGKQGSNIVASNS---KDQENPFLNNQAL---------EDSNRARKR 191
           +GK+ +  + S +   KD ENP  +N  +         EDS++++KR
Sbjct: 279 LGKRANRGLPSGTSIAKDHENPPPSNHIIAHHRDASSAEDSDQSQKR 325