Jatropha Genome Database

JcCB0126561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0126561.10 + phase: 2 /pseudo/partial
         (177 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018803001 assembled CDS                                        99   1e-21

>GSVIVT01018803001 assembled CDS
          Length = 291

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 90/191 (47%), Gaps = 54/191 (28%)

Query: 1   LQEEVKSYIIRL--DHWRY-----------LDPIQLLKTTPFHPKSPYAVLKCVAHWYTV 47
           L E V+S+I+     H RY             P Q  +T+PFHP+SPYA  K   +W   
Sbjct: 139 LLEAVRSHIMATGRSHIRYYQAGSSEMFGSTSPPQS-ETSPFHPRSPYAASK---YW--- 191

Query: 48  NYHEAYRLFACNRTLFNHEAMQKRCG*FCNKKSRTIMWWPRRSRIRWRNWHLGILALN*K 107
                       +T+    A  +R G                       +  G+   +  
Sbjct: 192 ---------VAEQTVHGEFAGFERLG-----------------------FRGGLCGSDVD 219

Query: 108 DHVVIDKRYFRPAE--VDNLKGDSSNARKVLGWKPKVGFEQLVKTMVDEDIEFAKREKML 165
           D    +    R  +  VDNLKGDSS ARKVLGWKPKV FEQLVK MVDEDIE AKREK+L
Sbjct: 220 DAAAGEAGRLRGGDGGVDNLKGDSSKARKVLGWKPKVDFEQLVKMMVDEDIELAKREKVL 279

Query: 166 VDVGYMVVRKH 176
           VD GYM  ++ 
Sbjct: 280 VDAGYMDAQQQ 290