Jatropha Genome Database

JcCB0126391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0126391.10 - phase: 1 /partial
         (593 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028240001 assembled CDS                                       199   4e-51
GSVIVT01028239001 assembled CDS                                       120   2e-27

>GSVIVT01028240001 assembled CDS
          Length = 575

 Score =  199 bits (506), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 155/385 (40%), Positives = 205/385 (53%), Gaps = 26/385 (6%)

Query: 1   GRDVNSQRAEDFTFMTEREVPVLGKVAT--EDNKDEKRT-ETLRMKLWEILGTVSSPRSQ 57
           G+D  ++  E+F     + V V  KV T  + NK EKRT E L+MKLWE+LG  SSP  Q
Sbjct: 158 GKDGTTE-MEEFRSSDGQGVGVSDKVGTVVKINKTEKRTSEALKMKLWEVLGNASSPNKQ 216

Query: 58  P-SHSLAPEACANNLKQEQVHQQKGDGVVKQIQNSDTIETDSENPDNTMXXXXXXXXXXX 116
             S S   E  AN+   E    QKG+ +VK  QNSD+IE DSE+PD T            
Sbjct: 217 FFSGSKTLEMDANSPMVEPNFDQKGNTIVKPRQNSDSIEPDSESPDATTRRPVTRSLTRK 276

Query: 117 XXXXXIQPKKTKTGQSTLSKLKLQEKSIFSFEDGLHRKGDAAISGGSSMSARNKGRRKNY 176
                +Q KK K+G S+  K KL+E+SIFSF+ GL  +   A++G    S + KG RK+ 
Sbjct: 277 RAPTKVQAKKVKSGPSSSCKQKLKERSIFSFKVGLSGELHDAVNGVLQKSIK-KGERKSC 335

Query: 177 VIEPRKIHFTENNSADEIQKATHRSETPPPSAEKASSLSDKM-GIKGCSPQSKGTSLEKK 235
            IEPRKI F E ++AD I+ A   S+  PPS EKAS L ++M   +GC            
Sbjct: 336 RIEPRKIWFPEKDNADRIKPANDGSKALPPS-EKASLLGNRMENFQGCPLN--------- 385

Query: 236 NGNGGDSHSSPKR-----DSHMPAGTNRADLQGDFSSPAISENEDQQGDVGNPSLKRVME 290
             NG   H  PK+     D H    T +AD  GD  SPA++++ D Q D+ NPSL  + +
Sbjct: 386 --NGDGDHVEPKKGDQEKDFHGSPVTKKADKVGDVDSPALTKSADGQEDLSNPSLNILED 443

Query: 291 PQDEFESPTFRVNXXXXXXXXXXXXXXDQMEQTFYSPAPVKRRFTLGNIRSFRTSQTSKE 350
           PQD F S TFR+               D MEQ   SPA  ++ FT G I  FRT  T K 
Sbjct: 444 PQD-FHSLTFRMRTPMRNSSPYSPPRTDGMEQDVCSPAVAEKIFTFGAIHCFRTLPTPKR 502

Query: 351 NCHPSDAKTELSNVAVELKDSPPRK 375
           +C+ S  ++E S+ A EL+ SP +K
Sbjct: 503 DCYGSKMQSE-SDDAEELRVSPTKK 526


>GSVIVT01028239001 assembled CDS
          Length = 141

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 85/103 (82%)

Query: 470 FKNKMKLATREKSSKILMSVSEDIHQLLQSIELQIQTDAGKLTSINKAKRKRLETRFQEQ 529
            K+KM+  T ++SS+I+MSV+E IH  LQ+++ Q+Q D GKLTS++K KRKRLETRFQEQ
Sbjct: 1   MKSKMETETSKRSSEIVMSVAEGIHLQLQNVQSQMQKDVGKLTSLSKLKRKRLETRFQEQ 60

Query: 530 EEKLKSIHDKFKQDLHKHRQDCKSTVEELEMHHIELKGTVKKQ 572
           +E+LK IH+KFK ++++H QDC+S++E LE+H IELK  V++Q
Sbjct: 61  QEQLKLIHEKFKDEINQHIQDCRSSIEGLEVHQIELKRNVERQ 103