Jatropha Genome Database

JcCB0126381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0126381.10 - phase: 0 
         (253 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008609001 assembled CDS                                       477   e-135
GSVIVT01036480001 assembled CDS                                       145   1e-35

>GSVIVT01008609001 assembled CDS
          Length = 417

 Score =  477 bits (1228), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/249 (92%), Positives = 239/249 (95%)

Query: 1   MGAGLAMSPGDIAFKSNFATLDEKTGIVTSRRADRHFEEEGPILCEALDRMKLPSYPQYE 60
           MGAGLAM PGDIAFKSNFATLDEKTGIVTSRRADRHFEEEGPILC ALD MKLPS+PQYE
Sbjct: 37  MGAGLAMLPGDIAFKSNFATLDEKTGIVTSRRADRHFEEEGPILCAALDGMKLPSFPQYE 96

Query: 61  VRVRYATEHRCGVVVKGPRLSGNISGTDPLKDNRLLLQAEALDDTDEARHTAAVVNELSR 120
           VRVRYATEHRCGVVVKGP LSGNISGTDPLKDNRLLLQA ALDDTDEA+HTAAVVNELS+
Sbjct: 97  VRVRYATEHRCGVVVKGPNLSGNISGTDPLKDNRLLLQATALDDTDEAKHTAAVVNELSK 156

Query: 121 EISRILISHPVNAKRAAEGKNIANVVLLRGCGIRIEVPSFEKKHGLWPCMVAPTKIIAGL 180
           EISRIL+SHP+NAKRAAEGKNIANVVLLRGCGI IEVP FEKKHGLWPCMVAPTKIIAGL
Sbjct: 157 EISRILVSHPLNAKRAAEGKNIANVVLLRGCGICIEVPPFEKKHGLWPCMVAPTKIIAGL 216

Query: 181 GLSLDIDILEAPGATGDYRTILTSKATAIAKALSAPLQSSPSVFVPGEDEHKPGRTDGYD 240
           GLSL IDILEAPGATGDYRT+LTSKATAIAKALSAPLQS PSVFVPGEDEHKPGR+DGYD
Sbjct: 217 GLSLGIDILEAPGATGDYRTLLTSKATAIAKALSAPLQSCPSVFVPGEDEHKPGRSDGYD 276

Query: 241 FGFLHIKVL 249
           FGFLHIK +
Sbjct: 277 FGFLHIKAI 285


>GSVIVT01036480001 assembled CDS
          Length = 75

 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/75 (90%), Positives = 70/75 (93%)

Query: 1  MGAGLAMSPGDIAFKSNFATLDEKTGIVTSRRADRHFEEEGPILCEALDRMKLPSYPQYE 60
          MGAG AMSPGDIAFKSN ATLDEKTGIVTSRRADRH EEEGP LC ALDRMKLPS+PQYE
Sbjct: 1  MGAGFAMSPGDIAFKSNIATLDEKTGIVTSRRADRHSEEEGPTLCAALDRMKLPSFPQYE 60

Query: 61 VRVRYATEHRCGVVV 75
          VRVRYATEHRCGVV+
Sbjct: 61 VRVRYATEHRCGVVL 75