Jatropha Genome Database

JcCB0125821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125821.20 - phase: 0 /partial
         (101 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020922001 assembled CDS                                       137   8e-34

>GSVIVT01020922001 assembled CDS
          Length = 229

 Score =  137 bits (346), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 77/98 (78%), Gaps = 1/98 (1%)

Query: 1   YKYYIHTEDASAKRLAKLYVATLFTGSLSWLFDRIFCKNISNWPINPQGHALWHVFMGFN 60
           YKYYIHT+D SAKRLAKL++ TLF GSL WL  R+  K+ S+W  + QGHALWHV MGFN
Sbjct: 131 YKYYIHTQDMSAKRLAKLHLGTLFIGSLCWLSHRLSHKDSSHWYFSLQGHALWHVLMGFN 190

Query: 61  SYFANTFLMFCRAHQRGWAPKVGYFGGVLPYVKIEKSK 98
           SYFAN FLMFCRA QR W PKV +F G LPYVKI+K K
Sbjct: 191 SYFANAFLMFCRAQQREWNPKVVHFLG-LPYVKIQKPK 227