Jatropha Genome Database

JcCB0125821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125821.10 + phase: 2 /partial
         (138 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037723001 assembled CDS                                       229   4e-61
GSVIVT01003355001 assembled CDS                                       135   5e-33
GSVIVT01002067001 assembled CDS                                       115   6e-27

>GSVIVT01037723001 assembled CDS
          Length = 433

 Score =  229 bits (583), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 105/117 (89%), Positives = 112/117 (95%)

Query: 20  FPWKEVSILPVQWHAMCLGLFASIIAPFGGFFASGFKRAFKVKDFGDSIPGHGGITDRMD 79
           FPWKE+S+LPVQWHA+CLGLFASIIAPFGGFFASGFKRAFK+KDFGDSIPGHGGITDRMD
Sbjct: 306 FPWKEISVLPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMD 365

Query: 80  CQMVMAVFAYIYHQSFVVPQSISVEMILDQILTNLTFEEQHALYTKLGEIIQERLVG 136
           CQMVMAVFAYIYHQSFVVPQS SVEMIL+QIL NLTFEEQHALY KLG+I QER +G
Sbjct: 366 CQMVMAVFAYIYHQSFVVPQSYSVEMILNQILRNLTFEEQHALYMKLGQIFQERQLG 422


>GSVIVT01003355001 assembled CDS
          Length = 367

 Score =  135 bits (340), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 59/62 (95%), Positives = 62/62 (100%)

Query: 20  FPWKEVSILPVQWHAMCLGLFASIIAPFGGFFASGFKRAFKVKDFGDSIPGHGGITDRMD 79
           FPWKEVSILPVQWHA+C+GLFASIIAPFGGFFASGFKRAFK+KDFGDSIPGHGGITDRMD
Sbjct: 306 FPWKEVSILPVQWHALCVGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMD 365

Query: 80  CQ 81
           CQ
Sbjct: 366 CQ 367


>GSVIVT01002067001 assembled CDS
          Length = 1078

 Score =  115 bits (288), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 51/55 (92%), Positives = 54/55 (98%)

Query: 20  FPWKEVSILPVQWHAMCLGLFASIIAPFGGFFASGFKRAFKVKDFGDSIPGHGGI 74
           FPWKEVSILPVQWHA+C+GLFASIIAPFGGFFASGFKRAFK+KDFGDSIPGH GI
Sbjct: 277 FPWKEVSILPVQWHALCVGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHEGI 331